miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 3' -54.8 NC_004684.1 + 43290 0.77 0.237762
Target:  5'- uGCCGGGCUGCGGCAccuuGAAGu--UCGGGa -3'
miRNA:   3'- -CGGCUCGAUGUCGU----CUUCuguGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 30633 0.7 0.575111
Target:  5'- aCCGGGCgcggcccugGCGGCGucAG-CGCCGGGa -3'
miRNA:   3'- cGGCUCGa--------UGUCGUcuUCuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 29819 0.69 0.618217
Target:  5'- uGCCGGGCaccucCAGCucccGGuACACCGGGu -3'
miRNA:   3'- -CGGCUCGau---GUCGucu-UC-UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 47782 0.66 0.823609
Target:  5'- cGCCGAGCgucaccgcCAGCAccucGGcCGCCGGa -3'
miRNA:   3'- -CGGCUCGau------GUCGUcu--UCuGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 24772 0.73 0.386888
Target:  5'- aCCG-GCgGCGGCGGggGAggUGCCGGGu -3'
miRNA:   3'- cGGCuCGaUGUCGUCuuCU--GUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 42391 0.73 0.395785
Target:  5'- cGCUGAGCgcgaccgggUugGGCAGGaugccgcccugGGACACCGGa -3'
miRNA:   3'- -CGGCUCG---------AugUCGUCU-----------UCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 27719 0.72 0.471459
Target:  5'- gGCCGAGCgcgAGCAcGAGGCACgCGGa -3'
miRNA:   3'- -CGGCUCGaugUCGUcUUCUGUG-GCCc -5'
19183 3' -54.8 NC_004684.1 + 32270 0.72 0.481433
Target:  5'- aGCCGAGCUgGCuGUugaaguaaccGGAGGugACCGGc -3'
miRNA:   3'- -CGGCUCGA-UGuCG----------UCUUCugUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 22868 0.71 0.501682
Target:  5'- uCCGGGCcaccACGGCGGccAAGACGCUGGa -3'
miRNA:   3'- cGGCUCGa---UGUCGUC--UUCUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 45460 0.7 0.564427
Target:  5'- cGCCGAGgUugaugcuccCGGCGGuGGuCACCGGGc -3'
miRNA:   3'- -CGGCUCgAu--------GUCGUCuUCuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 681 0.71 0.532724
Target:  5'- aCCGAGUUcgccgcGCAGCGcAAGACcgccGCCGGGu -3'
miRNA:   3'- cGGCUCGA------UGUCGUcUUCUG----UGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 58765 0.71 0.501682
Target:  5'- uGCCGAGgauCGGCGGugccGGuGCACCGGGc -3'
miRNA:   3'- -CGGCUCgauGUCGUCu---UC-UGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 20230 0.76 0.276716
Target:  5'- gGCCGccGCUACGGUgcuccuGGGCACCGGGg -3'
miRNA:   3'- -CGGCu-CGAUGUCGucu---UCUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 7785 0.71 0.532724
Target:  5'- gGUCGAGCauuggUGC-GCGGGAuGugACCGGGu -3'
miRNA:   3'- -CGGCUCG-----AUGuCGUCUU-CugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 54435 0.75 0.305416
Target:  5'- cGCCGcGU--CGGCGGGAG-CACCGGGg -3'
miRNA:   3'- -CGGCuCGauGUCGUCUUCuGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 57878 0.71 0.501682
Target:  5'- gGUCGgaAGCUggcGCAGCucguacGGGAGugACCGGGu -3'
miRNA:   3'- -CGGC--UCGA---UGUCG------UCUUCugUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 43863 0.71 0.532724
Target:  5'- cGCCGAGgUugGugaGCAGGcugguGACGCCGGa -3'
miRNA:   3'- -CGGCUCgAugU---CGUCUu----CUGUGGCCc -5'
19183 3' -54.8 NC_004684.1 + 8970 0.7 0.585839
Target:  5'- gGCCGgaGGCaACGGCGGGGuuccGGCGgCCGGGc -3'
miRNA:   3'- -CGGC--UCGaUGUCGUCUU----CUGU-GGCCC- -5'
19183 3' -54.8 NC_004684.1 + 58654 0.75 0.305416
Target:  5'- cGCCGGGC-GCGGCGGcgaACAUCGGGa -3'
miRNA:   3'- -CGGCUCGaUGUCGUCuucUGUGGCCC- -5'
19183 3' -54.8 NC_004684.1 + 41096 0.72 0.46159
Target:  5'- gGCCGAGCUGCguaccgauGGCcGAGGuCACCGa- -3'
miRNA:   3'- -CGGCUCGAUG--------UCGuCUUCuGUGGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.