miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19183 5' -63.8 NC_004684.1 + 26263 0.66 0.359482
Target:  5'- gGGCCUGGaa--GGCCUCaaggauucggugaccUCGGCCAUc -3'
miRNA:   3'- -UCGGACCauggCCGGAG---------------GGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 18408 0.66 0.356286
Target:  5'- cGGCCagcagGGcACCGacgcGCCcgcCCCGGCCACc -3'
miRNA:   3'- -UCGGa----CCaUGGC----CGGa--GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 2640 0.66 0.356286
Target:  5'- cGCCUGGcaccaGCuCGGCCagCagguCGGCCACa -3'
miRNA:   3'- uCGGACCa----UG-GCCGGa-Gg---GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 25870 0.66 0.356286
Target:  5'- gAGCUgcGGUGCCagGGCCUCguagCgGGCCAUg -3'
miRNA:   3'- -UCGGa-CCAUGG--CCGGAG----GgCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 60131 0.66 0.356286
Target:  5'- cGCCUGG---CGGCCUgCUCGGUgGCg -3'
miRNA:   3'- uCGGACCaugGCCGGA-GGGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 28216 0.66 0.356286
Target:  5'- cAGCCUGcGcUACCuGGCCgcccaCCCGGagCACa -3'
miRNA:   3'- -UCGGAC-C-AUGG-CCGGa----GGGCCg-GUGa -5'
19183 5' -63.8 NC_004684.1 + 19604 0.66 0.356286
Target:  5'- cGGCCgaGGUGCUGGCggugacgCUCGGCgACa -3'
miRNA:   3'- -UCGGa-CCAUGGCCGga-----GGGCCGgUGa -5'
19183 5' -63.8 NC_004684.1 + 23056 0.66 0.356286
Target:  5'- cGGCCUGGccaaGCUGGCCaaCCGGUUcgACg -3'
miRNA:   3'- -UCGGACCa---UGGCCGGagGGCCGG--UGa -5'
19183 5' -63.8 NC_004684.1 + 36079 0.66 0.356286
Target:  5'- cGuCCUGG--CUGGUCUgCCCGGUCACc -3'
miRNA:   3'- uC-GGACCauGGCCGGA-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 54289 0.66 0.348385
Target:  5'- cGGCCgggGGUGCgcgcauCGGCC-CCCuuGGCgGCUg -3'
miRNA:   3'- -UCGGa--CCAUG------GCCGGaGGG--CCGgUGA- -5'
19183 5' -63.8 NC_004684.1 + 67368 0.66 0.348385
Target:  5'- -cCCUGGUACC-GCC-CCCGGuguccggcuCCACg -3'
miRNA:   3'- ucGGACCAUGGcCGGaGGGCC---------GGUGa -5'
19183 5' -63.8 NC_004684.1 + 66904 0.66 0.348385
Target:  5'- cGGCCUucgGCgCGGCCUUggCGGCCACa -3'
miRNA:   3'- -UCGGAccaUG-GCCGGAGg-GCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 24764 0.66 0.348385
Target:  5'- uGGCa-GGgaagACCGGCa-CCgGGCCGCUg -3'
miRNA:   3'- -UCGgaCCa---UGGCCGgaGGgCCGGUGA- -5'
19183 5' -63.8 NC_004684.1 + 14853 0.66 0.348385
Target:  5'- -aCC-GGUGCCGGacaCCUCCUGGCUccACa -3'
miRNA:   3'- ucGGaCCAUGGCC---GGAGGGCCGG--UGa -5'
19183 5' -63.8 NC_004684.1 + 58166 0.66 0.348385
Target:  5'- cAGCagguucgGGUcCUGGCCcaCCCGGUCACg -3'
miRNA:   3'- -UCGga-----CCAuGGCCGGa-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 11604 0.66 0.34526
Target:  5'- cGCCUGGacgacggcaccgaGCUGGCCg-UCGGCCGCc -3'
miRNA:   3'- uCGGACCa------------UGGCCGGagGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 31484 0.66 0.34061
Target:  5'- gAGCCUcuUugCGGUCcaCCUGGCCGCg -3'
miRNA:   3'- -UCGGAccAugGCCGGa-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 24420 0.66 0.34061
Target:  5'- gGGCgUuGUACUuGUCUcCCCGGCCACa -3'
miRNA:   3'- -UCGgAcCAUGGcCGGA-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 13975 0.66 0.34061
Target:  5'- cAGUCgcgcGGcGCaGGCCagCCCGGCCACc -3'
miRNA:   3'- -UCGGa---CCaUGgCCGGa-GGGCCGGUGa -5'
19183 5' -63.8 NC_004684.1 + 42323 0.66 0.34061
Target:  5'- aGGCCaccaacCCGGCCgcCCUGGCCACc -3'
miRNA:   3'- -UCGGaccau-GGCCGGa-GGGCCGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.