miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19202 3' -53.8 NC_004684.1 + 66908 0.66 0.855813
Target:  5'- uUGUCgGuGCUGC-CGACcUCGCUGg -3'
miRNA:   3'- gACAGgCuUGACGcGUUGcAGCGACg -5'
19202 3' -53.8 NC_004684.1 + 41698 0.66 0.855813
Target:  5'- aUG-CC-AGCUGCGCcACGcgCGUUGCc -3'
miRNA:   3'- gACaGGcUUGACGCGuUGCa-GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 13778 0.66 0.855813
Target:  5'- gUGUCCGGGCcGCGCGugcucaagaGCGgCGCacUGUc -3'
miRNA:   3'- gACAGGCUUGaCGCGU---------UGCaGCG--ACG- -5'
19202 3' -53.8 NC_004684.1 + 42781 0.66 0.855813
Target:  5'- cCUGgCCGcccaUGCGCGccACGUcCGCUGUc -3'
miRNA:   3'- -GACaGGCuug-ACGCGU--UGCA-GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 15056 0.66 0.847395
Target:  5'- gCUGgaUCCGAuucgcuggcCUGCGCAccGCG-CaGCUGCg -3'
miRNA:   3'- -GAC--AGGCUu--------GACGCGU--UGCaG-CGACG- -5'
19202 3' -53.8 NC_004684.1 + 43245 0.66 0.838754
Target:  5'- cCUGcaCCgGAGCggUGCGCAGCGgguacggcUGCUGCg -3'
miRNA:   3'- -GACa-GG-CUUG--ACGCGUUGCa-------GCGACG- -5'
19202 3' -53.8 NC_004684.1 + 64753 0.66 0.829898
Target:  5'- gCUGgCCGAGCUgGUGCcaGGCGUCggucugGCUGUc -3'
miRNA:   3'- -GACaGGCUUGA-CGCG--UUGCAG------CGACG- -5'
19202 3' -53.8 NC_004684.1 + 54781 0.66 0.829898
Target:  5'- gUGcCCGcaAGgUGCGCGGCGUgGCggGCc -3'
miRNA:   3'- gACaGGC--UUgACGCGUUGCAgCGa-CG- -5'
19202 3' -53.8 NC_004684.1 + 9644 0.66 0.829898
Target:  5'- cCUGaCCGcucACUGCGCAGCuGcCGCcuggGCg -3'
miRNA:   3'- -GACaGGCu--UGACGCGUUG-CaGCGa---CG- -5'
19202 3' -53.8 NC_004684.1 + 35147 0.66 0.819919
Target:  5'- -gGUCCGAc--GCGCAguagaucGCGcCGCUGUc -3'
miRNA:   3'- gaCAGGCUugaCGCGU-------UGCaGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 11831 0.67 0.811579
Target:  5'- gCUGUCCGGcgACUgGCGCGACuUCG--GCa -3'
miRNA:   3'- -GACAGGCU--UGA-CGCGUUGcAGCgaCG- -5'
19202 3' -53.8 NC_004684.1 + 37082 0.67 0.811579
Target:  5'- cCUGUUCGcGgUGCGCGAU---GCUGCg -3'
miRNA:   3'- -GACAGGCuUgACGCGUUGcagCGACG- -5'
19202 3' -53.8 NC_004684.1 + 7052 0.67 0.802135
Target:  5'- gCUGgCCGAAC-GCGCggUGaUCGC-GCu -3'
miRNA:   3'- -GACaGGCUUGaCGCGuuGC-AGCGaCG- -5'
19202 3' -53.8 NC_004684.1 + 51556 0.67 0.792516
Target:  5'- uUGU-CGcuCUGCGCcaguGCG-CGCUGCg -3'
miRNA:   3'- gACAgGCuuGACGCGu---UGCaGCGACG- -5'
19202 3' -53.8 NC_004684.1 + 5604 0.67 0.782731
Target:  5'- -cGgggCCGAGCUggcGCGCAugGU-GCUGg -3'
miRNA:   3'- gaCa--GGCUUGA---CGCGUugCAgCGACg -5'
19202 3' -53.8 NC_004684.1 + 50006 0.67 0.782731
Target:  5'- uCUGaCCGggUgUGCGCAcCGUCgGCgGCa -3'
miRNA:   3'- -GACaGGCuuG-ACGCGUuGCAG-CGaCG- -5'
19202 3' -53.8 NC_004684.1 + 23763 0.67 0.782731
Target:  5'- -aGUUCGGGCcgugggGCGCGGCGUUGg-GCg -3'
miRNA:   3'- gaCAGGCUUGa-----CGCGUUGCAGCgaCG- -5'
19202 3' -53.8 NC_004684.1 + 50783 0.67 0.772792
Target:  5'- aUGUCCGcGCggucggUGCGCAACaugaaGUCGUcGCg -3'
miRNA:   3'- gACAGGCuUG------ACGCGUUG-----CAGCGaCG- -5'
19202 3' -53.8 NC_004684.1 + 38230 0.67 0.772792
Target:  5'- -gGUUCGGgaacuGCUGCGCGGCGaa-CUGCg -3'
miRNA:   3'- gaCAGGCU-----UGACGCGUUGCagcGACG- -5'
19202 3' -53.8 NC_004684.1 + 56454 0.68 0.76271
Target:  5'- aUGUCgcggcUGAGCaUGCGCc-CGUCGCUGg -3'
miRNA:   3'- gACAG-----GCUUG-ACGCGuuGCAGCGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.