miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19223 3' -62.5 NC_004684.1 + 63084 0.66 0.419095
Target:  5'- ---cGCCGUGCaaGcacuacauuacGGCG-ACCCGGCg -3'
miRNA:   3'- uaguCGGCACGcgC-----------CCGCaUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 26982 0.66 0.419095
Target:  5'- cAUCcaGGCCgGUGCgaGCGcGGCGgGCgCGGCg -3'
miRNA:   3'- -UAG--UCGG-CACG--CGC-CCGCaUGgGCCG- -5'
19223 3' -62.5 NC_004684.1 + 65748 0.66 0.419095
Target:  5'- aGUUGGCCu--CGCGGGCGUuggccgccgcGCgCCGGUg -3'
miRNA:   3'- -UAGUCGGcacGCGCCCGCA----------UG-GGCCG- -5'
19223 3' -62.5 NC_004684.1 + 63854 0.66 0.410243
Target:  5'- uGUCGGUgccaCGUGCGCGguGGCGgccuucaucggGCCCaGCg -3'
miRNA:   3'- -UAGUCG----GCACGCGC--CCGCa----------UGGGcCG- -5'
19223 3' -62.5 NC_004684.1 + 34282 0.66 0.410243
Target:  5'- cGUCAGCaa-GgGC-GGCGUGUCCGGCg -3'
miRNA:   3'- -UAGUCGgcaCgCGcCCGCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 54127 0.66 0.410243
Target:  5'- -gCGGCCaccaGCGCGcuGGCGgucacgGCCUGGCc -3'
miRNA:   3'- uaGUCGGca--CGCGC--CCGCa-----UGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 1463 0.66 0.410243
Target:  5'- gGUCgAGaCCGgGC-CGGaCGUGCCCGGUg -3'
miRNA:   3'- -UAG-UC-GGCaCGcGCCcGCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 49056 0.66 0.410243
Target:  5'- gGUCGGCUc--CGgGGGCGgcaCCGGCg -3'
miRNA:   3'- -UAGUCGGcacGCgCCCGCaugGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 13086 0.66 0.409364
Target:  5'- uGUCAGCCGccaagggggccgaUGCGCgcacccccggccGGGUGgcgGCgCUGGCu -3'
miRNA:   3'- -UAGUCGGC-------------ACGCG------------CCCGCa--UG-GGCCG- -5'
19223 3' -62.5 NC_004684.1 + 57376 0.66 0.401508
Target:  5'- -cCGGUCG-GCGCGcGGCaggUCCGGCa -3'
miRNA:   3'- uaGUCGGCaCGCGC-CCGcauGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 6775 0.66 0.401508
Target:  5'- cAUgGGCgaCGUGCGcCGGGUGa--CCGGCc -3'
miRNA:   3'- -UAgUCG--GCACGC-GCCCGCaugGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 66348 0.66 0.401508
Target:  5'- ---cGCCG-GgGCGGGCG-GCCagGGCg -3'
miRNA:   3'- uaguCGGCaCgCGCCCGCaUGGg-CCG- -5'
19223 3' -62.5 NC_004684.1 + 47096 0.66 0.401508
Target:  5'- -aCGGCgGUGCcgggacGCGGGgGU--CCGGCa -3'
miRNA:   3'- uaGUCGgCACG------CGCCCgCAugGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 60704 0.66 0.401508
Target:  5'- -aCGGCCauggugGUGUGUuccuuucgGGGagagGUGCCCGGCg -3'
miRNA:   3'- uaGUCGG------CACGCG--------CCCg---CAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 20921 0.66 0.401508
Target:  5'- -gCAGCgGcaaGCGCGuGGUGgcCCUGGCc -3'
miRNA:   3'- uaGUCGgCa--CGCGC-CCGCauGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 33639 0.66 0.392892
Target:  5'- -gUAGCUGagGuCGgGGGCGU-CCUGGCc -3'
miRNA:   3'- uaGUCGGCa-C-GCgCCCGCAuGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 42528 0.66 0.392892
Target:  5'- cUCAccGCCGUG-GUcGGCGUGCUgaCGGCg -3'
miRNA:   3'- uAGU--CGGCACgCGcCCGCAUGG--GCCG- -5'
19223 3' -62.5 NC_004684.1 + 4209 0.66 0.388629
Target:  5'- uUCGGCCGcgucgagucgacccgGCGCGcaaccuGGUucggagucugagccgGUGCCCGGCg -3'
miRNA:   3'- uAGUCGGCa--------------CGCGC------CCG---------------CAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 43719 0.66 0.384397
Target:  5'- gGUCcgGGCCGaccagGcCGUcGGUGUACCCGGUc -3'
miRNA:   3'- -UAG--UCGGCa----C-GCGcCCGCAUGGGCCG- -5'
19223 3' -62.5 NC_004684.1 + 47326 0.66 0.384397
Target:  5'- uGUC-GCCG-GUGUGGGCGUcgagcaugGCCaccaGGCc -3'
miRNA:   3'- -UAGuCGGCaCGCGCCCGCA--------UGGg---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.