miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19223 5' -52.8 NC_004684.1 + 59868 0.66 0.885757
Target:  5'- cGGCCAGGUCgGUCCGgGcagguCCAc---- -3'
miRNA:   3'- aCCGGUCCAG-UAGGUgCu----GGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 56911 0.66 0.878148
Target:  5'- cGGCCGGGUCuugCCGuCGAUag--UGGc -3'
miRNA:   3'- aCCGGUCCAGua-GGU-GCUGguaaACU- -5'
19223 5' -52.8 NC_004684.1 + 47365 0.66 0.878148
Target:  5'- aUGGCgGGGUCuucaggcaCCACGGCCu----- -3'
miRNA:   3'- -ACCGgUCCAGua------GGUGCUGGuaaacu -5'
19223 5' -52.8 NC_004684.1 + 61430 0.66 0.878148
Target:  5'- cGGCC-GGUCGcUCaccggCGCGGCCAggUUGGa -3'
miRNA:   3'- aCCGGuCCAGU-AG-----GUGCUGGUa-AACU- -5'
19223 5' -52.8 NC_004684.1 + 55575 0.66 0.878148
Target:  5'- gUGGCCGGGg-GUCCAgGcACCAa---- -3'
miRNA:   3'- -ACCGGUCCagUAGGUgC-UGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 5873 0.66 0.878148
Target:  5'- aGGCCGGG-CAgcaCCAgccUGACCGggUGGc -3'
miRNA:   3'- aCCGGUCCaGUa--GGU---GCUGGUaaACU- -5'
19223 5' -52.8 NC_004684.1 + 4897 0.66 0.878148
Target:  5'- cGGCCuGGUCG-CCAcCGGCCu----- -3'
miRNA:   3'- aCCGGuCCAGUaGGU-GCUGGuaaacu -5'
19223 5' -52.8 NC_004684.1 + 18846 0.66 0.862164
Target:  5'- aGGUCGGGUCGuggUCgGUGACCGggUGGc -3'
miRNA:   3'- aCCGGUCCAGU---AGgUGCUGGUaaACU- -5'
19223 5' -52.8 NC_004684.1 + 4726 0.66 0.862164
Target:  5'- cGGCCAGGaccUCG-CgCACGGCCAc---- -3'
miRNA:   3'- aCCGGUCC---AGUaG-GUGCUGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 53486 0.66 0.862164
Target:  5'- uUGGCCAGGUaggCGUCgAUGGCgGg--GAa -3'
miRNA:   3'- -ACCGGUCCA---GUAGgUGCUGgUaaaCU- -5'
19223 5' -52.8 NC_004684.1 + 30320 0.66 0.862164
Target:  5'- aGGUCGGGgCAccggCCACG-UCGUUUGAc -3'
miRNA:   3'- aCCGGUCCaGUa---GGUGCuGGUAAACU- -5'
19223 5' -52.8 NC_004684.1 + 67206 0.66 0.861339
Target:  5'- gGGCCAccuugguGGUgGUCC-CGACCAa---- -3'
miRNA:   3'- aCCGGU-------CCAgUAGGuGCUGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 58249 0.66 0.853803
Target:  5'- cGGCCAGGccgagCAUCU-UGACCAUg--- -3'
miRNA:   3'- aCCGGUCCa----GUAGGuGCUGGUAaacu -5'
19223 5' -52.8 NC_004684.1 + 959 0.66 0.853803
Target:  5'- gGGCCugcGGGUCAUUgGCGACUc----- -3'
miRNA:   3'- aCCGG---UCCAGUAGgUGCUGGuaaacu -5'
19223 5' -52.8 NC_004684.1 + 20403 0.66 0.853803
Target:  5'- aGGCCgAGGUCAgCCugGACgAc---- -3'
miRNA:   3'- aCCGG-UCCAGUaGGugCUGgUaaacu -5'
19223 5' -52.8 NC_004684.1 + 32100 0.66 0.853803
Target:  5'- uUGGCCAGGcgguggaGUCCAC-ACCGgagGAc -3'
miRNA:   3'- -ACCGGUCCag-----UAGGUGcUGGUaaaCU- -5'
19223 5' -52.8 NC_004684.1 + 40403 0.66 0.853803
Target:  5'- aGGCC-GGUCAgCCAcuCGAUCAUcUUGGa -3'
miRNA:   3'- aCCGGuCCAGUaGGU--GCUGGUA-AACU- -5'
19223 5' -52.8 NC_004684.1 + 65040 0.66 0.853803
Target:  5'- gUGGCUgAGGUCGUCCcaggagAUGACCGc---- -3'
miRNA:   3'- -ACCGG-UCCAGUAGG------UGCUGGUaaacu -5'
19223 5' -52.8 NC_004684.1 + 63248 0.66 0.853803
Target:  5'- cGGCCcgagcAGcUUGUCCACGACCAUcaGGu -3'
miRNA:   3'- aCCGG-----UCcAGUAGGUGCUGGUAaaCU- -5'
19223 5' -52.8 NC_004684.1 + 54545 0.66 0.853803
Target:  5'- cGGCCucGGcC-UCCGCGACCAc---- -3'
miRNA:   3'- aCCGGu-CCaGuAGGUGCUGGUaaacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.