miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19224 5' -62.7 NC_004684.1 + 54898 0.66 0.420475
Target:  5'- uGCGgcaCgaGGCgGCCcUGGUGGCCg- -3'
miRNA:   3'- uCGCa--GaaCCGgCGGcACCACCGGgc -5'
19224 5' -62.7 NC_004684.1 + 24526 0.66 0.420475
Target:  5'- gGGCGUgc-GGCgGCC-UGGuUGGCCCc -3'
miRNA:   3'- -UCGCAgaaCCGgCGGcACC-ACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 40359 0.66 0.420475
Target:  5'- cGGCGgcCUUGGCCuugggggccucgGCgGUGGcGGCCUu -3'
miRNA:   3'- -UCGCa-GAACCGG------------CGgCACCaCCGGGc -5'
19224 5' -62.7 NC_004684.1 + 51884 0.66 0.420475
Target:  5'- aGGCcUC--GGCC-UCGUGGUGGCaCCGa -3'
miRNA:   3'- -UCGcAGaaCCGGcGGCACCACCG-GGC- -5'
19224 5' -62.7 NC_004684.1 + 25713 0.66 0.420475
Target:  5'- cGCG-CUgGGUguUGCCGaGGUcGGCCCGg -3'
miRNA:   3'- uCGCaGAaCCG--GCGGCaCCA-CCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 67231 0.66 0.411641
Target:  5'- aGGUGaaCUUGGCgGCCaUGGUGGUUCc -3'
miRNA:   3'- -UCGCa-GAACCGgCGGcACCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 46354 0.66 0.411641
Target:  5'- gAGCGUggUGGUCGUCGUGcucGGCCa- -3'
miRNA:   3'- -UCGCAgaACCGGCGGCACca-CCGGgc -5'
19224 5' -62.7 NC_004684.1 + 60275 0.66 0.411641
Target:  5'- cGGCGg--UGGCgGuuGc-GUGGCCCGg -3'
miRNA:   3'- -UCGCagaACCGgCggCacCACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 11759 0.66 0.411641
Target:  5'- uGGCaUC-UGGuucuCCGgUGUGGUGGCCCc -3'
miRNA:   3'- -UCGcAGaACC----GGCgGCACCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 30719 0.66 0.410764
Target:  5'- --aGUCUc-GCCGCCGUcgaugguGGUGGCCUc -3'
miRNA:   3'- ucgCAGAacCGGCGGCA-------CCACCGGGc -5'
19224 5' -62.7 NC_004684.1 + 1997 0.66 0.402923
Target:  5'- cGCGUUcUGGCagCGCCuggGUGGgGGUCCGc -3'
miRNA:   3'- uCGCAGaACCG--GCGG---CACCaCCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 2043 0.66 0.402923
Target:  5'- uGGUGgccCUgggGGCCGCCaucGUGGCCUGc -3'
miRNA:   3'- -UCGCa--GAa--CCGGCGGcacCACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 7221 0.66 0.402923
Target:  5'- cGCGUC-UGGgaGCgCGUggaGGUGuGCCCGg -3'
miRNA:   3'- uCGCAGaACCggCG-GCA---CCAC-CGGGC- -5'
19224 5' -62.7 NC_004684.1 + 57832 0.66 0.394322
Target:  5'- cGGCGgugC-UGGCCGCCGguacccGCCCGa -3'
miRNA:   3'- -UCGCa--GaACCGGCGGCaccac-CGGGC- -5'
19224 5' -62.7 NC_004684.1 + 14825 0.66 0.394322
Target:  5'- uGUGg---GGCgCGCCGUGGUGcgucGCCCc -3'
miRNA:   3'- uCGCagaaCCG-GCGGCACCAC----CGGGc -5'
19224 5' -62.7 NC_004684.1 + 28221 0.66 0.389219
Target:  5'- uGCG-CUaccUGGCCGCCcacccggagcacagcGcGGUGGaCCCGg -3'
miRNA:   3'- uCGCaGA---ACCGGCGG---------------CaCCACC-GGGC- -5'
19224 5' -62.7 NC_004684.1 + 53401 0.66 0.385841
Target:  5'- cGUGUCcaGGUgGCCG-GGcUGGCCUGc -3'
miRNA:   3'- uCGCAGaaCCGgCGGCaCC-ACCGGGC- -5'
19224 5' -62.7 NC_004684.1 + 14480 0.66 0.377482
Target:  5'- uGCGgccacGCCGCCGUGcUGGCCgGa -3'
miRNA:   3'- uCGCagaacCGGCGGCACcACCGGgC- -5'
19224 5' -62.7 NC_004684.1 + 34169 0.66 0.376653
Target:  5'- gAGCGUaagcaguugGGCCGCCG-GGcuguccgucgccaUGGCCaCGg -3'
miRNA:   3'- -UCGCAgaa------CCGGCGGCaCC-------------ACCGG-GC- -5'
19224 5' -62.7 NC_004684.1 + 53638 0.66 0.369245
Target:  5'- gAGCG-CcaGGCCGUUgagcaccgagGUGGUGGCaCCGa -3'
miRNA:   3'- -UCGCaGaaCCGGCGG----------CACCACCG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.