miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19225 5' -62.2 NC_004684.1 + 52897 0.66 0.414585
Target:  5'- gCCACCGGcgaCC-GGCGUgguaccggcaACCACCUc -3'
miRNA:   3'- aGGUGGCCug-GGaCCGCG----------UGGUGGAa -5'
19225 5' -62.2 NC_004684.1 + 16726 0.66 0.414585
Target:  5'- -gCACCGGGCgcacgCCUGGUccGCACCcCCg- -3'
miRNA:   3'- agGUGGCCUG-----GGACCG--CGUGGuGGaa -5'
19225 5' -62.2 NC_004684.1 + 18412 0.66 0.414585
Target:  5'- cUUCGgCGG-CCCggcgGGCGCACCGgCg- -3'
miRNA:   3'- -AGGUgGCCuGGGa---CCGCGUGGUgGaa -5'
19225 5' -62.2 NC_004684.1 + 2949 0.66 0.414585
Target:  5'- -gCACCGaGGCCaucGGCGCGCUGCUg- -3'
miRNA:   3'- agGUGGC-CUGGga-CCGCGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 56246 0.66 0.414585
Target:  5'- gUCCACC-GAC---GGCGCgACCACCUUg -3'
miRNA:   3'- -AGGUGGcCUGggaCCGCG-UGGUGGAA- -5'
19225 5' -62.2 NC_004684.1 + 40433 0.66 0.411911
Target:  5'- -gCACCGGccuuggucagcgguGCCCaGGCG-GCCGCCUg -3'
miRNA:   3'- agGUGGCC--------------UGGGaCCGCgUGGUGGAa -5'
19225 5' -62.2 NC_004684.1 + 61706 0.66 0.411911
Target:  5'- cUCCACCGGcgucaggauGCCaCcGGCGUugugcuucuccaccGCCGCCUc -3'
miRNA:   3'- -AGGUGGCC---------UGG-GaCCGCG--------------UGGUGGAa -5'
19225 5' -62.2 NC_004684.1 + 50098 0.66 0.405714
Target:  5'- --gGCCGcGACCCcGGCcagaaaaccaGCGCCGCCg- -3'
miRNA:   3'- aggUGGC-CUGGGaCCG----------CGUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 41413 0.66 0.405714
Target:  5'- gCCAgCGGguuGCCUUcGCGCACCAgCUUg -3'
miRNA:   3'- aGGUgGCC---UGGGAcCGCGUGGUgGAA- -5'
19225 5' -62.2 NC_004684.1 + 11598 0.66 0.405714
Target:  5'- cUCACCGGACCacccGGUcaCGCCGCCa- -3'
miRNA:   3'- aGGUGGCCUGGga--CCGc-GUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 55572 0.66 0.405714
Target:  5'- gUCGCCGGACagcGGCGCGCUcgcGCCc- -3'
miRNA:   3'- aGGUGGCCUGggaCCGCGUGG---UGGaa -5'
19225 5' -62.2 NC_004684.1 + 2450 0.66 0.405714
Target:  5'- gCCACC--GCCCgccaGGCGCucaccgccGCCACCUg -3'
miRNA:   3'- aGGUGGccUGGGa---CCGCG--------UGGUGGAa -5'
19225 5' -62.2 NC_004684.1 + 63750 0.66 0.405714
Target:  5'- gCCgACCGGcaugACCCaggUGGCGCGCUucgGCCa- -3'
miRNA:   3'- aGG-UGGCC----UGGG---ACCGCGUGG---UGGaa -5'
19225 5' -62.2 NC_004684.1 + 40050 0.66 0.405714
Target:  5'- --uGCCGGugCCcacGGCGaUACCGCCg- -3'
miRNA:   3'- aggUGGCCugGGa--CCGC-GUGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 15270 0.66 0.405714
Target:  5'- -aCACUGGagGCCUgcgcGGUGCACCugCUg -3'
miRNA:   3'- agGUGGCC--UGGGa---CCGCGUGGugGAa -5'
19225 5' -62.2 NC_004684.1 + 23643 0.66 0.405714
Target:  5'- -aCGCCGGuaccgucaGCCgaGGCGCugCGCUa- -3'
miRNA:   3'- agGUGGCC--------UGGgaCCGCGugGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 30468 0.66 0.405714
Target:  5'- gUCCACCcGGCCUcgaccGGUGCgauGCCACCg- -3'
miRNA:   3'- -AGGUGGcCUGGGa----CCGCG---UGGUGGaa -5'
19225 5' -62.2 NC_004684.1 + 59448 0.66 0.405714
Target:  5'- cCCACCGGuguGCgCCggucGGCGgcgaugucCACCACCUg -3'
miRNA:   3'- aGGUGGCC---UG-GGa---CCGC--------GUGGUGGAa -5'
19225 5' -62.2 NC_004684.1 + 47360 0.66 0.405714
Target:  5'- gCCACgguaGGACCCggcgguagUGGCGCugaGCCAgCCUUc -3'
miRNA:   3'- aGGUGg---CCUGGG--------ACCGCG---UGGU-GGAA- -5'
19225 5' -62.2 NC_004684.1 + 25344 0.66 0.396963
Target:  5'- cUCC-CCGGugGCCUUGGCG-GCgGCCUg -3'
miRNA:   3'- -AGGuGGCC--UGGGACCGCgUGgUGGAa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.