miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19228 3' -65.1 NC_004684.1 + 32389 0.66 0.341882
Target:  5'- gCCGCaCGCGUCaCCCGGaucaGCaCGGCCu -3'
miRNA:   3'- gGGCG-GCGUAGgGGGUCc---UG-GCCGGu -5'
19228 3' -65.1 NC_004684.1 + 55387 0.66 0.341882
Target:  5'- gCCGCCGCgaaGUCCUgCGGGGuCauGCCGu -3'
miRNA:   3'- gGGCGGCG---UAGGGgGUCCU-GgcCGGU- -5'
19228 3' -65.1 NC_004684.1 + 51461 0.66 0.341882
Target:  5'- gCCCggugGCCGaggCCCCCAGGA-UGGCg- -3'
miRNA:   3'- -GGG----CGGCguaGGGGGUCCUgGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 5749 0.66 0.341125
Target:  5'- uUCGCCGaCA-CCUCCGGGggguucgACUGGCCc -3'
miRNA:   3'- gGGCGGC-GUaGGGGGUCC-------UGGCCGGu -5'
19228 3' -65.1 NC_004684.1 + 66267 0.66 0.334369
Target:  5'- -gCGCgGCGUCgUCCCAGcGGaCGGCCAc -3'
miRNA:   3'- ggGCGgCGUAG-GGGGUC-CUgGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 57852 0.66 0.334369
Target:  5'- aCCCGCCcgauugccaGCGUCCCggcacgCCA-GACCGGUg- -3'
miRNA:   3'- -GGGCGG---------CGUAGGG------GGUcCUGGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 13565 0.66 0.329919
Target:  5'- aUCgGCUacugcgucgaggcggGCAUUCUCCAGGACCagggcuGGCCGg -3'
miRNA:   3'- -GGgCGG---------------CGUAGGGGGUCCUGG------CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 63883 0.66 0.326977
Target:  5'- aCCCGUCggcgauugcgGCGUCCUggcggCCAcGGugCGGCCc -3'
miRNA:   3'- -GGGCGG----------CGUAGGG-----GGU-CCugGCCGGu -5'
19228 3' -65.1 NC_004684.1 + 40547 0.66 0.319707
Target:  5'- aCCuCCGCGaCCUCCAGGAgCUGGgCGa -3'
miRNA:   3'- gGGcGGCGUaGGGGGUCCU-GGCCgGU- -5'
19228 3' -65.1 NC_004684.1 + 56927 0.66 0.319707
Target:  5'- uCCUGCCuggaGCG-CgCCCGGGACUGGUg- -3'
miRNA:   3'- -GGGCGG----CGUaGgGGGUCCUGGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 12806 0.66 0.319707
Target:  5'- cCCCGCCGaCGacgCgCCCgAGGACggCGGCUc -3'
miRNA:   3'- -GGGCGGC-GUa--G-GGGgUCCUG--GCCGGu -5'
19228 3' -65.1 NC_004684.1 + 63209 0.66 0.319707
Target:  5'- aCCaCCGCG-CCCgCCGGGcgcaACCgGGCCAu -3'
miRNA:   3'- gGGcGGCGUaGGG-GGUCC----UGG-CCGGU- -5'
19228 3' -65.1 NC_004684.1 + 49045 0.66 0.312559
Target:  5'- aCCgCGCCGCcgGUCggCUCCGGGGgCGGCa- -3'
miRNA:   3'- -GG-GCGGCG--UAG--GGGGUCCUgGCCGgu -5'
19228 3' -65.1 NC_004684.1 + 21165 0.66 0.305533
Target:  5'- -aCGCCGCAgcugUCCacgagGGGACuCGGCCAc -3'
miRNA:   3'- ggGCGGCGUa---GGGgg---UCCUG-GCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 26927 0.66 0.305533
Target:  5'- aCCGCCGagaCCCCCgAGcAgCGGCCGc -3'
miRNA:   3'- gGGCGGCguaGGGGG-UCcUgGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 42790 0.66 0.305533
Target:  5'- gCCUGCCGgG-CCUCCAGGGCCuugaucCCAa -3'
miRNA:   3'- -GGGCGGCgUaGGGGGUCCUGGcc----GGU- -5'
19228 3' -65.1 NC_004684.1 + 44564 0.66 0.305533
Target:  5'- gCCCgGCCuGCA-CCgCCGGGaacuGCCGGUCGa -3'
miRNA:   3'- -GGG-CGG-CGUaGGgGGUCC----UGGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 52331 0.66 0.305533
Target:  5'- gCCGUCgaccucauccgGCGUCCCcacgucguCCAGGAgCCGGUCGg -3'
miRNA:   3'- gGGCGG-----------CGUAGGG--------GGUCCU-GGCCGGU- -5'
19228 3' -65.1 NC_004684.1 + 20311 0.66 0.298629
Target:  5'- aCCGCCGUucugGUgCCCUggcaauGGGCCGGgCAu -3'
miRNA:   3'- gGGCGGCG----UAgGGGGu-----CCUGGCCgGU- -5'
19228 3' -65.1 NC_004684.1 + 10375 0.66 0.298629
Target:  5'- aUCGCgCGCA-CCgCCGGGuACCaGGCCGc -3'
miRNA:   3'- gGGCG-GCGUaGGgGGUCC-UGG-CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.