miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19229 3' -55.7 NC_004684.1 + 39449 0.66 0.797313
Target:  5'- gGCCGAGgcgugcggCUaCCUCGGCUcguGACAG-GUa -3'
miRNA:   3'- -CGGCUCaa------GA-GGAGCUGG---CUGUCgCG- -5'
19229 3' -55.7 NC_004684.1 + 26595 0.66 0.797313
Target:  5'- uGCgCGGGUUCgCC---ACCGGCGGCGg -3'
miRNA:   3'- -CG-GCUCAAGaGGagcUGGCUGUCGCg -5'
19229 3' -55.7 NC_004684.1 + 65243 0.66 0.797313
Target:  5'- cGCCGAGUUCaCCgacgCG-CCGAa--CGCa -3'
miRNA:   3'- -CGGCUCAAGaGGa---GCuGGCUgucGCG- -5'
19229 3' -55.7 NC_004684.1 + 41805 0.66 0.787835
Target:  5'- cGCCGAcGUUCUUCgUgGACCacccggaGGCGCu -3'
miRNA:   3'- -CGGCU-CAAGAGG-AgCUGGcug----UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 19812 0.66 0.787835
Target:  5'- gGCCaagGAGUUCgUCagcgCGugUGACGGCGg -3'
miRNA:   3'- -CGG---CUCAAG-AGga--GCugGCUGUCGCg -5'
19229 3' -55.7 NC_004684.1 + 58953 0.66 0.787835
Target:  5'- aGUCaGGUUC-CCUgGcCCGGCgGGCGCg -3'
miRNA:   3'- -CGGcUCAAGaGGAgCuGGCUG-UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 21768 0.66 0.787835
Target:  5'- cGCCu-GUUCcCCggcaaGACCGAC-GCGCu -3'
miRNA:   3'- -CGGcuCAAGaGGag---CUGGCUGuCGCG- -5'
19229 3' -55.7 NC_004684.1 + 66298 0.66 0.786879
Target:  5'- cGCCGGGUcgCggCCUgGucACCGAucacgucCAGCGCc -3'
miRNA:   3'- -CGGCUCAa-Ga-GGAgC--UGGCU-------GUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 10178 0.66 0.778205
Target:  5'- cGCuCGAGgagUUCCa-GACCGccCAGCGCc -3'
miRNA:   3'- -CG-GCUCaa-GAGGagCUGGCu-GUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 23975 0.66 0.778205
Target:  5'- cGCCGGG----CCUCGGguUCGGCGGCGg -3'
miRNA:   3'- -CGGCUCaagaGGAGCU--GGCUGUCGCg -5'
19229 3' -55.7 NC_004684.1 + 20501 0.66 0.778205
Target:  5'- gGCgGGGUg---CUCGGCUGACAugucGCGCg -3'
miRNA:   3'- -CGgCUCAagagGAGCUGGCUGU----CGCG- -5'
19229 3' -55.7 NC_004684.1 + 10013 0.66 0.778205
Target:  5'- uGCCG-GacCUgCCgcgcgcCGACCGGgAGCGCa -3'
miRNA:   3'- -CGGCuCaaGA-GGa-----GCUGGCUgUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 40534 0.66 0.777234
Target:  5'- cGCCGc---CUCCugcucgcuggugcUCGACCGGuccacCAGCGCg -3'
miRNA:   3'- -CGGCucaaGAGG-------------AGCUGGCU-----GUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 26045 0.66 0.768432
Target:  5'- aCCGGGUgg-CCUUGGCCcggccgucGGCGGuCGCg -3'
miRNA:   3'- cGGCUCAagaGGAGCUGG--------CUGUC-GCG- -5'
19229 3' -55.7 NC_004684.1 + 21074 0.66 0.768432
Target:  5'- aCCGGGca--CCUgGGCCGGuCAGUGCg -3'
miRNA:   3'- cGGCUCaagaGGAgCUGGCU-GUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 49250 0.66 0.768432
Target:  5'- uGCCGAGcgugaaCUCCUUG-CCGccCAGCaGCa -3'
miRNA:   3'- -CGGCUCaa----GAGGAGCuGGCu-GUCG-CG- -5'
19229 3' -55.7 NC_004684.1 + 5751 0.66 0.767447
Target:  5'- cGCCGAcacCUCCgggggguUCGACUGGCccaAGUGCg -3'
miRNA:   3'- -CGGCUcaaGAGG-------AGCUGGCUG---UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 58553 0.66 0.767447
Target:  5'- -gCGAGcggccUUCUCCUUGcuguagcccuugcGCCG-CAGCGCc -3'
miRNA:   3'- cgGCUC-----AAGAGGAGC-------------UGGCuGUCGCG- -5'
19229 3' -55.7 NC_004684.1 + 10090 0.66 0.758526
Target:  5'- cGCCGGGUgCUCagccacACCGGCgacaAGCGCg -3'
miRNA:   3'- -CGGCUCAaGAGgagc--UGGCUG----UCGCG- -5'
19229 3' -55.7 NC_004684.1 + 63261 0.66 0.758526
Target:  5'- cGCCGAuGcgCUCCUgGACCuGgAGcCGCc -3'
miRNA:   3'- -CGGCU-CaaGAGGAgCUGGcUgUC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.