miRNA display CGI


Results 1 - 20 of 278 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19231 5' -63.3 NC_004684.1 + 67201 0.66 0.385039
Target:  5'- -uGCCAgGGCCAccuuGGUGG-UGGUCCCg -3'
miRNA:   3'- ggUGGUgCUGGU----CCGCCgACCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 66909 0.7 0.205857
Target:  5'- uUCGgCGCGGCCuuGGCGGCcacaaccucggcgaaGGCCUCCg -3'
miRNA:   3'- -GGUgGUGCUGGu-CCGCCGa--------------CCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 66646 0.73 0.126872
Target:  5'- gCCACgAUGGCCucGGCGGC-GGCCCg- -3'
miRNA:   3'- -GGUGgUGCUGGu-CCGCCGaCCGGGgg -5'
19231 5' -63.3 NC_004684.1 + 66589 0.69 0.243557
Target:  5'- gCCGCCACGGCgAGGUgcaGGUgagGGCCaUCa -3'
miRNA:   3'- -GGUGGUGCUGgUCCG---CCGa--CCGGgGG- -5'
19231 5' -63.3 NC_004684.1 + 66477 0.72 0.172009
Target:  5'- gCCGCCACccgguggcggcuaGGCCuuGGCGGC-GGCCUCg -3'
miRNA:   3'- -GGUGGUG-------------CUGGu-CCGCCGaCCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 66137 0.67 0.355949
Target:  5'- gUCGCCGgugucguugguccagUGACCGGGuuGCUGGCagaUCCa -3'
miRNA:   3'- -GGUGGU---------------GCUGGUCCgcCGACCGg--GGG- -5'
19231 5' -63.3 NC_004684.1 + 65964 0.73 0.126872
Target:  5'- uCgGCCugGACCuuGGCccGGCaGGCCUCCa -3'
miRNA:   3'- -GgUGGugCUGGu-CCG--CCGaCCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 65916 0.66 0.419153
Target:  5'- gCCGCCGC-ACCGGGCacguccGGCccGGUCUCg -3'
miRNA:   3'- -GGUGGUGcUGGUCCG------CCGa-CCGGGGg -5'
19231 5' -63.3 NC_004684.1 + 65835 0.66 0.410453
Target:  5'- gCACCAUcAgCAGGCGGUugugggGGCCgCUg -3'
miRNA:   3'- gGUGGUGcUgGUCCGCCGa-----CCGGgGG- -5'
19231 5' -63.3 NC_004684.1 + 65739 0.68 0.308153
Target:  5'- aCGCCACGAaguuggccucgCGGGC-GUUGGCCgCCg -3'
miRNA:   3'- gGUGGUGCUg----------GUCCGcCGACCGGgGG- -5'
19231 5' -63.3 NC_004684.1 + 65582 0.68 0.303932
Target:  5'- gCCGCCAUGGCCucggucaugagccgcAcGGCGGCguccugguUGGCgUCCa -3'
miRNA:   3'- -GGUGGUGCUGG---------------U-CCGCCG--------ACCGgGGG- -5'
19231 5' -63.3 NC_004684.1 + 65457 0.66 0.368685
Target:  5'- gCCACCguGCGccgguACCAGGCccGGCaGGCCgggUCCg -3'
miRNA:   3'- -GGUGG--UGC-----UGGUCCG--CCGaCCGG---GGG- -5'
19231 5' -63.3 NC_004684.1 + 65334 0.66 0.385039
Target:  5'- uCCACCACGu---GGC-GCUGGCCguagUCCa -3'
miRNA:   3'- -GGUGGUGCugguCCGcCGACCGG----GGG- -5'
19231 5' -63.3 NC_004684.1 + 65321 0.81 0.03368
Target:  5'- gCACCACGGCCAGcGCcaggcaggccacgauGGC-GGCCCCCa -3'
miRNA:   3'- gGUGGUGCUGGUC-CG---------------CCGaCCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 65081 0.69 0.267307
Target:  5'- gUCACCgACGugCAcGGCGGUcagcaccgcgucgUGGCCCa- -3'
miRNA:   3'- -GGUGG-UGCugGU-CCGCCG-------------ACCGGGgg -5'
19231 5' -63.3 NC_004684.1 + 64655 0.66 0.419153
Target:  5'- aCGCCGaacguguggcCGugCGGuGUGGCgcacuuGCCCCCg -3'
miRNA:   3'- gGUGGU----------GCugGUC-CGCCGac----CGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 64349 0.66 0.368685
Target:  5'- gCCACCAC--CCGGGCcucguuguGC-GGCCCCUc -3'
miRNA:   3'- -GGUGGUGcuGGUCCGc-------CGaCCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 64255 0.67 0.360689
Target:  5'- gCACCGUGACCc--CGGCguacGGCCCCUc -3'
miRNA:   3'- gGUGGUGCUGGuccGCCGa---CCGGGGG- -5'
19231 5' -63.3 NC_004684.1 + 64238 0.67 0.359896
Target:  5'- -gGCCuCGGCCAGGCG-CUGGguguuggcgcacaCCaCCCg -3'
miRNA:   3'- ggUGGuGCUGGUCCGCcGACC-------------GG-GGG- -5'
19231 5' -63.3 NC_004684.1 + 64131 0.66 0.385039
Target:  5'- uCCACgAugucCGGCCAGGCcagcaGCgUGGUCUCCg -3'
miRNA:   3'- -GGUGgU----GCUGGUCCGc----CG-ACCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.