miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19233 5' -64.2 NC_004684.1 + 54076 0.66 0.370271
Target:  5'- cGGGUGCGGugacCCGGGUcaagGCGUCggaGGg -3'
miRNA:   3'- -CCCACGCCu---GGUCCGca--CGCGGg--CCa -5'
19233 5' -64.2 NC_004684.1 + 7249 0.66 0.370271
Target:  5'- cGGUGCaccaGGAgCaAGGUGcGCGaCCCGGUc -3'
miRNA:   3'- cCCACG----CCUgG-UCCGCaCGC-GGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 34429 0.66 0.370271
Target:  5'- aGGcgGCGagguuGGCCAGcGCGaGCGCCUGGa -3'
miRNA:   3'- cCCa-CGC-----CUGGUC-CGCaCGCGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 19099 0.66 0.370271
Target:  5'- uGGUGCGcgaaGGCCgguGGGaCGUGCGCauGGUg -3'
miRNA:   3'- cCCACGC----CUGG---UCC-GCACGCGggCCA- -5'
19233 5' -64.2 NC_004684.1 + 8179 0.66 0.370271
Target:  5'- gGGGgcgcGCuGGGCCAGGCGcagcugaucaaGCGCgUGGUc -3'
miRNA:   3'- -CCCa---CG-CCUGGUCCGCa----------CGCGgGCCA- -5'
19233 5' -64.2 NC_004684.1 + 51594 0.66 0.362255
Target:  5'- cGGGUGguccaaGGucuCCAGGUGUuccuuggccGCGCUCGGc -3'
miRNA:   3'- -CCCACg-----CCu--GGUCCGCA---------CGCGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 50012 0.66 0.354362
Target:  5'- cGGGUGUGcGcACCGucGGCGgcaGCGUggCCGGUg -3'
miRNA:   3'- -CCCACGC-C-UGGU--CCGCa--CGCG--GGCCA- -5'
19233 5' -64.2 NC_004684.1 + 42860 0.66 0.354362
Target:  5'- cGGUGgGGccaACCAGGCcgccgcaCGCCCGGc -3'
miRNA:   3'- cCCACgCC---UGGUCCGcac----GCGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 38815 0.66 0.354362
Target:  5'- cGGUGCccGCCuGGCG-GUGCCCGa- -3'
miRNA:   3'- cCCACGccUGGuCCGCaCGCGGGCca -5'
19233 5' -64.2 NC_004684.1 + 33885 0.66 0.346591
Target:  5'- ---gGCGGugCGGGCG-GUG-CCGGUg -3'
miRNA:   3'- cccaCGCCugGUCCGCaCGCgGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 40302 0.66 0.338942
Target:  5'- uGGUGUcGAU--GGCGUaGCGCCCGGc -3'
miRNA:   3'- cCCACGcCUGguCCGCA-CGCGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 12218 0.66 0.338942
Target:  5'- cGGUGCGuucuCCGGGgGUGCuUCCGGc -3'
miRNA:   3'- cCCACGCcu--GGUCCgCACGcGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 31683 0.66 0.338942
Target:  5'- cGGGUGaaacaGGACC-GGC-UGaucaacauCGCCCGGUu -3'
miRNA:   3'- -CCCACg----CCUGGuCCGcAC--------GCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 51864 0.66 0.338942
Target:  5'- ---cGCGGAUCAGcGCcuccaGCGCCCGGc -3'
miRNA:   3'- cccaCGCCUGGUC-CGca---CGCGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 30839 0.66 0.331416
Target:  5'- cGGGUa-GGugCcGGaaUGCGCCCGGUa -3'
miRNA:   3'- -CCCAcgCCugGuCCgcACGCGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 49692 0.66 0.331416
Target:  5'- cGGUGUccagGGcACCGGGCacGCGCUCGGc -3'
miRNA:   3'- cCCACG----CC-UGGUCCGcaCGCGGGCCa -5'
19233 5' -64.2 NC_004684.1 + 54896 0.66 0.331416
Target:  5'- -cGUGCGGcACgAGGCG-GC-CCUGGUg -3'
miRNA:   3'- ccCACGCC-UGgUCCGCaCGcGGGCCA- -5'
19233 5' -64.2 NC_004684.1 + 61654 0.66 0.331416
Target:  5'- aGGUGuCGGcgaaguAgCAGGUGUGCGCCUGc- -3'
miRNA:   3'- cCCAC-GCC------UgGUCCGCACGCGGGCca -5'
19233 5' -64.2 NC_004684.1 + 62391 0.66 0.326961
Target:  5'- aGGaGCGGcACCGGGCccuugcccucgcgcUGCGCCCaGGUg -3'
miRNA:   3'- cCCaCGCC-UGGUCCGc-------------ACGCGGG-CCA- -5'
19233 5' -64.2 NC_004684.1 + 65691 0.66 0.324015
Target:  5'- cGGUGCcugccaGGugCAGGUucGgGCCCGGg -3'
miRNA:   3'- cCCACG------CCugGUCCGcaCgCGGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.