miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19234 3' -53.9 NC_004684.1 + 55714 0.66 0.840543
Target:  5'- gCAGC-UGCUuGCGCG-GCGGuCACGu -3'
miRNA:   3'- gGUCGaACGAcCGUGCaCGCUuGUGU- -5'
19234 3' -53.9 NC_004684.1 + 30198 0.66 0.840543
Target:  5'- aCCAGCa-GCUGGCcGCGcGCGucgaugcucGGCGCGa -3'
miRNA:   3'- -GGUCGaaCGACCG-UGCaCGC---------UUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 26720 0.66 0.840543
Target:  5'- gCCAcCUUGCUGGC-CGaGCGcGACugGc -3'
miRNA:   3'- -GGUcGAACGACCGuGCaCGC-UUGugU- -5'
19234 3' -53.9 NC_004684.1 + 48890 0.66 0.829857
Target:  5'- gCCAGCUUGaacucccagcggUGGCG-GUGcCGGACACc -3'
miRNA:   3'- -GGUCGAACg-----------ACCGUgCAC-GCUUGUGu -5'
19234 3' -53.9 NC_004684.1 + 37127 0.66 0.822565
Target:  5'- uCUGGCUUGaCguaGcCACGUGUGAGCGCc -3'
miRNA:   3'- -GGUCGAAC-Gac-C-GUGCACGCUUGUGu -5'
19234 3' -53.9 NC_004684.1 + 62622 0.66 0.822565
Target:  5'- --cGCUUGCUGGCgACGcGCacGAAgGCGg -3'
miRNA:   3'- gguCGAACGACCG-UGCaCG--CUUgUGU- -5'
19234 3' -53.9 NC_004684.1 + 67250 0.66 0.822565
Target:  5'- aCCGGCguuuccggGCUGGCGuCGc-UGAACACGg -3'
miRNA:   3'- -GGUCGaa------CGACCGU-GCacGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 29172 0.66 0.81327
Target:  5'- -aGGCUUGCU--CAUGUcgagcGCGAACACAa -3'
miRNA:   3'- ggUCGAACGAccGUGCA-----CGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 14721 0.66 0.81327
Target:  5'- aCCGGgUcaaagaggUGCUGGcCACcUGgGAGCGCAa -3'
miRNA:   3'- -GGUCgA--------ACGACC-GUGcACgCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 1059 0.66 0.803784
Target:  5'- aCCGGUUgUGCUGGCugGcgGCGcugGACGu- -3'
miRNA:   3'- -GGUCGA-ACGACCGugCa-CGC---UUGUgu -5'
19234 3' -53.9 NC_004684.1 + 63119 0.66 0.803784
Target:  5'- aCCAGgccCUUGCUGGCgAUGgugGUGGugGCc -3'
miRNA:   3'- -GGUC---GAACGACCG-UGCa--CGCUugUGu -5'
19234 3' -53.9 NC_004684.1 + 6938 0.66 0.803784
Target:  5'- cCCGGCaUGCUGGC-CGagGuCGAACcCGg -3'
miRNA:   3'- -GGUCGaACGACCGuGCa-C-GCUUGuGU- -5'
19234 3' -53.9 NC_004684.1 + 35519 0.66 0.803784
Target:  5'- aCCGGC--GCUacuGCACcgaGUGCGGGCACGa -3'
miRNA:   3'- -GGUCGaaCGAc--CGUG---CACGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 20435 0.66 0.802825
Target:  5'- aUCAGCcuggcGCUGuGCACGgcgGCGAagaugcuGCGCAc -3'
miRNA:   3'- -GGUCGaa---CGAC-CGUGCa--CGCU-------UGUGU- -5'
19234 3' -53.9 NC_004684.1 + 55969 0.66 0.794117
Target:  5'- uCCAGCggGUcaucGGCgucuACG-GCGAACACAu -3'
miRNA:   3'- -GGUCGaaCGa---CCG----UGCaCGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 15040 0.66 0.794117
Target:  5'- aCCGGCUc-CUGGacgACGUGgGGACGCc -3'
miRNA:   3'- -GGUCGAacGACCg--UGCACgCUUGUGu -5'
19234 3' -53.9 NC_004684.1 + 58809 0.66 0.794117
Target:  5'- aCCGGCgcguucaUGCUcGGCAggcucaucuCGUGCG-GCACGa -3'
miRNA:   3'- -GGUCGa------ACGA-CCGU---------GCACGCuUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 43433 0.67 0.784281
Target:  5'- cCCGGCgagGCcgaggucGGUGCG-GCGGGCGCGg -3'
miRNA:   3'- -GGUCGaa-CGa------CCGUGCaCGCUUGUGU- -5'
19234 3' -53.9 NC_004684.1 + 8992 0.67 0.784281
Target:  5'- aCCAGg-UGCUGcGCACGgugcugaugcGCGAAgGCAu -3'
miRNA:   3'- -GGUCgaACGAC-CGUGCa---------CGCUUgUGU- -5'
19234 3' -53.9 NC_004684.1 + 22092 0.67 0.784281
Target:  5'- gCAGCgacgGCUGGCugGUGUuccuguggccgGAaaccggACGCAa -3'
miRNA:   3'- gGUCGaa--CGACCGugCACG-----------CU------UGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.