miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19236 5' -58.8 NC_004684.1 + 9448 0.66 0.612697
Target:  5'- uGGAgGCCCugguGUuccggGCGCUGGAGCuggcgggcaagcgcaGCCg -3'
miRNA:   3'- -CCUgUGGG----CGua---CGCGACCUCG---------------UGGg -5'
19236 5' -58.8 NC_004684.1 + 3176 0.66 0.608474
Target:  5'- gGGAUgcaACCUGuCGUGUaGCUGGuGCgacACCCc -3'
miRNA:   3'- -CCUG---UGGGC-GUACG-CGACCuCG---UGGG- -5'
19236 5' -58.8 NC_004684.1 + 1764 0.66 0.608474
Target:  5'- cGGAgCugCgCGCGUG-GCUGGA-CGCCa -3'
miRNA:   3'- -CCU-GugG-GCGUACgCGACCUcGUGGg -5'
19236 5' -58.8 NC_004684.1 + 1246 0.66 0.608474
Target:  5'- cGGuCGCCCgGCcccggcccagAUGCGCUGGcuGGUGgCCa -3'
miRNA:   3'- -CCuGUGGG-CG----------UACGCGACC--UCGUgGG- -5'
19236 5' -58.8 NC_004684.1 + 1494 0.66 0.608474
Target:  5'- aGGugGCCCGCcuguUGCGCgaccacuacGGcGUcaACCCc -3'
miRNA:   3'- -CCugUGGGCGu---ACGCGa--------CCuCG--UGGG- -5'
19236 5' -58.8 NC_004684.1 + 59940 0.66 0.608474
Target:  5'- cGGcccCACgUGCGcguUGUGCUGGcGGCGCUCg -3'
miRNA:   3'- -CCu--GUGgGCGU---ACGCGACC-UCGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 11479 0.66 0.601092
Target:  5'- aGGACGgCCGgGUGUucgggcacaucgccuGCUGGgacucccGGCACCg -3'
miRNA:   3'- -CCUGUgGGCgUACG---------------CGACC-------UCGUGGg -5'
19236 5' -58.8 NC_004684.1 + 37627 0.66 0.597931
Target:  5'- uGACGCaCCGCcuucucgGCGUUGGA-CACgCCg -3'
miRNA:   3'- cCUGUG-GGCGua-----CGCGACCUcGUG-GG- -5'
19236 5' -58.8 NC_004684.1 + 55638 0.66 0.597931
Target:  5'- cGAUuucgGCUgGCGUGCGUggaGGAGgGCCUg -3'
miRNA:   3'- cCUG----UGGgCGUACGCGa--CCUCgUGGG- -5'
19236 5' -58.8 NC_004684.1 + 4163 0.66 0.597931
Target:  5'- uGGACgcgaucaugGCCCGguUGCGCccgGcGGGCGCg- -3'
miRNA:   3'- -CCUG---------UGGGCguACGCGa--C-CUCGUGgg -5'
19236 5' -58.8 NC_004684.1 + 23144 0.66 0.597931
Target:  5'- cGACugCgC-CAUGgucaCGCUGGAGCagguGCCCg -3'
miRNA:   3'- cCUGugG-GcGUAC----GCGACCUCG----UGGG- -5'
19236 5' -58.8 NC_004684.1 + 2065 0.66 0.597931
Target:  5'- cGugGCCUGCcugGCGCUGGccgugguGCACa- -3'
miRNA:   3'- cCugUGGGCGua-CGCGACCu------CGUGgg -5'
19236 5' -58.8 NC_004684.1 + 62997 0.66 0.597931
Target:  5'- cGGugGCCgggaaCGCgAUGCGCaGGAugaccGCGCCg -3'
miRNA:   3'- -CCugUGG-----GCG-UACGCGaCCU-----CGUGGg -5'
19236 5' -58.8 NC_004684.1 + 4409 0.66 0.597931
Target:  5'- cGGcCACCgGCcacGUGCGCaccaccGAGCACgCCa -3'
miRNA:   3'- -CCuGUGGgCG---UACGCGac----CUCGUG-GG- -5'
19236 5' -58.8 NC_004684.1 + 65424 0.66 0.597931
Target:  5'- -cGCGCCagGCGcUGCGCUGGcgugcGGCGCgCg -3'
miRNA:   3'- ccUGUGGg-CGU-ACGCGACC-----UCGUGgG- -5'
19236 5' -58.8 NC_004684.1 + 20432 0.66 0.596878
Target:  5'- uGGCAgCCGC-UGCGUUGcaucaucccgaacGGGuCACCCa -3'
miRNA:   3'- cCUGUgGGCGuACGCGAC-------------CUC-GUGGG- -5'
19236 5' -58.8 NC_004684.1 + 44236 0.66 0.596878
Target:  5'- cGGGCACCUGCuccaGCGUgaccaUGGcgcagucgacggcGGCACaCCa -3'
miRNA:   3'- -CCUGUGGGCGua--CGCG-----ACC-------------UCGUG-GG- -5'
19236 5' -58.8 NC_004684.1 + 21463 0.66 0.596878
Target:  5'- uGGACGCCaucgaacUGCAUGC-CcGcGAGCGCaCCa -3'
miRNA:   3'- -CCUGUGG-------GCGUACGcGaC-CUCGUG-GG- -5'
19236 5' -58.8 NC_004684.1 + 33664 0.66 0.588464
Target:  5'- cGGGCAUggcgUCGCugugcaccaccaccGCGCUGGA-CACCCu -3'
miRNA:   3'- -CCUGUG----GGCGua------------CGCGACCUcGUGGG- -5'
19236 5' -58.8 NC_004684.1 + 25700 0.66 0.587414
Target:  5'- -cGCACgCCGUcgccGCGCUGGGuGUugCCg -3'
miRNA:   3'- ccUGUG-GGCGua--CGCGACCU-CGugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.