miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19237 5' -53.9 NC_004684.1 + 26048 0.66 0.868857
Target:  5'- --gGGUGgccuuggccCGGCCGUcggcggUCGCGGuGCCg -3'
miRNA:   3'- cugCCACa--------GCUGGCAaa----AGCGUC-CGG- -5'
19237 5' -53.9 NC_004684.1 + 61268 0.66 0.868857
Target:  5'- cGGCGGUGUCGGgauUCGacagcugCGcCGGGUCg -3'
miRNA:   3'- -CUGCCACAGCU---GGCaaaa---GC-GUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 34211 0.66 0.867279
Target:  5'- cACGGUGaCGACCuugccgaggUCGaGGGCCu -3'
miRNA:   3'- cUGCCACaGCUGGcaaa-----AGCgUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 42998 0.66 0.866486
Target:  5'- -uUGGUGUCGGCCuucaccugaaucucGUUUUCGCcGaCCu -3'
miRNA:   3'- cuGCCACAGCUGG--------------CAAAAGCGuCcGG- -5'
19237 5' -53.9 NC_004684.1 + 66663 0.66 0.860872
Target:  5'- -uCGGUGUCG-UCGggguagUUggagCGCcAGGCCg -3'
miRNA:   3'- cuGCCACAGCuGGCa-----AAa---GCG-UCCGG- -5'
19237 5' -53.9 NC_004684.1 + 48064 0.66 0.860872
Target:  5'- uGGCGGUuUCGACCaccgGUUccggCGUcGGCCg -3'
miRNA:   3'- -CUGCCAcAGCUGG----CAAaa--GCGuCCGG- -5'
19237 5' -53.9 NC_004684.1 + 49197 0.66 0.860872
Target:  5'- cGGCGGccugcucgGUCGGCCaGUcggUCGgugcCGGGCCg -3'
miRNA:   3'- -CUGCCa-------CAGCUGG-CAaa-AGC----GUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 15895 0.66 0.860872
Target:  5'- cGGCGGUGaccgGGCgGUgccaucCGCAGGUCg -3'
miRNA:   3'- -CUGCCACag--CUGgCAaaa---GCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 55727 0.66 0.860872
Target:  5'- cGGCGGUcacGUUGGCCGccg-UGCuggcguGGCCg -3'
miRNA:   3'- -CUGCCA---CAGCUGGCaaaaGCGu-----CCGG- -5'
19237 5' -53.9 NC_004684.1 + 55057 0.66 0.860872
Target:  5'- gGGCGGUGUUGuuuguuacGCCGag--CGCAGGg- -3'
miRNA:   3'- -CUGCCACAGC--------UGGCaaaaGCGUCCgg -5'
19237 5' -53.9 NC_004684.1 + 4823 0.66 0.860872
Target:  5'- --aGGUGUCGAuuCCGgc--CGacaAGGCCa -3'
miRNA:   3'- cugCCACAGCU--GGCaaaaGCg--UCCGG- -5'
19237 5' -53.9 NC_004684.1 + 1211 0.66 0.860872
Target:  5'- cGCGGcGUCGACU----UCGUcGGCCu -3'
miRNA:   3'- cUGCCaCAGCUGGcaaaAGCGuCCGG- -5'
19237 5' -53.9 NC_004684.1 + 55283 0.66 0.858431
Target:  5'- -cCGGgGUCGgggguugcgugaugGCCGccg-CGCGGGCCa -3'
miRNA:   3'- cuGCCaCAGC--------------UGGCaaaaGCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 9910 0.66 0.852655
Target:  5'- uGCGGcgcuUGUCGACgGUgg--GCAGGaCCg -3'
miRNA:   3'- cUGCC----ACAGCUGgCAaaagCGUCC-GG- -5'
19237 5' -53.9 NC_004684.1 + 64937 0.66 0.852655
Target:  5'- cGGCGGUGagCGcCUGgcgggCGguGGCCc -3'
miRNA:   3'- -CUGCCACa-GCuGGCaaaa-GCguCCGG- -5'
19237 5' -53.9 NC_004684.1 + 60504 0.66 0.852655
Target:  5'- gGACGGUGaccagcaUGAUCGac--CGCAGGCUg -3'
miRNA:   3'- -CUGCCACa------GCUGGCaaaaGCGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 26121 0.66 0.850984
Target:  5'- cGGCGcUGUcCGACCGcaccagcaccUCGCuGGCCg -3'
miRNA:   3'- -CUGCcACA-GCUGGCaaa-------AGCGuCCGG- -5'
19237 5' -53.9 NC_004684.1 + 18250 0.66 0.850984
Target:  5'- -cCGGUGUgcgaGACCGgcgacgguacgUUC-CAGGCCg -3'
miRNA:   3'- cuGCCACAg---CUGGCaa---------AAGcGUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 67199 0.66 0.844213
Target:  5'- cACGGUcUCG-CCGU--UCGgCAGGUCa -3'
miRNA:   3'- cUGCCAcAGCuGGCAaaAGC-GUCCGG- -5'
19237 5' -53.9 NC_004684.1 + 3800 0.66 0.844213
Target:  5'- aGGCGGUaaCcACCGccgcgccgCGCAGGCCg -3'
miRNA:   3'- -CUGCCAcaGcUGGCaaaa----GCGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.