miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19238 3' -58.7 NC_004684.1 + 67140 0.68 0.444501
Target:  5'- cCGUcGG-CCUGCACGAUGaucgugGCGGCGa -3'
miRNA:   3'- aGCA-CCgGGACGUGUUGCa-----CGCCGUg -5'
19238 3' -58.7 NC_004684.1 + 66530 0.67 0.473498
Target:  5'- gCGcGGCCCggcggGCACGGCGguagGCGuuguGCGCc -3'
miRNA:   3'- aGCaCCGGGa----CGUGUUGCa---CGC----CGUG- -5'
19238 3' -58.7 NC_004684.1 + 65996 0.67 0.483374
Target:  5'- gUCGcUGGCCa-GUGCAACG-GCGGCc- -3'
miRNA:   3'- -AGC-ACCGGgaCGUGUUGCaCGCCGug -5'
19238 3' -58.7 NC_004684.1 + 65430 0.79 0.08031
Target:  5'- ---aGGCgCUGCGCuGGCGUGCGGCGCg -3'
miRNA:   3'- agcaCCGgGACGUG-UUGCACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 64664 0.7 0.331532
Target:  5'- gUGUGGCCgUGCG----GUGUGGCGCa -3'
miRNA:   3'- aGCACCGGgACGUguugCACGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 64646 0.68 0.435059
Target:  5'- gUCGUGGCgCacCGCGAUGU-CGGCGCg -3'
miRNA:   3'- -AGCACCGgGacGUGUUGCAcGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 63792 0.68 0.453097
Target:  5'- uUCGgcGGCCCagUGCGCGACGUacuccacguccccGCuguGGCGCa -3'
miRNA:   3'- -AGCa-CCGGG--ACGUGUUGCA-------------CG---CCGUG- -5'
19238 3' -58.7 NC_004684.1 + 63154 0.67 0.503415
Target:  5'- gUGcGGCuCCUGCGCGcCGcGCaGGCGCa -3'
miRNA:   3'- aGCaCCG-GGACGUGUuGCaCG-CCGUG- -5'
19238 3' -58.7 NC_004684.1 + 62933 0.7 0.339433
Target:  5'- ---cGGCCUcGCGCGcACGUGCGGCc- -3'
miRNA:   3'- agcaCCGGGaCGUGU-UGCACGCCGug -5'
19238 3' -58.7 NC_004684.1 + 59931 0.66 0.586636
Target:  5'- gUCGguguccGGCCCcacgUGCGCGuUGUgcugGCGGCGCu -3'
miRNA:   3'- -AGCa-----CCGGG----ACGUGUuGCA----CGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 59140 0.66 0.576032
Target:  5'- aCGUGGCgggaCUGCAUGuUGU-CGGCGCu -3'
miRNA:   3'- aGCACCGg---GACGUGUuGCAcGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 58770 0.66 0.565472
Target:  5'- -gGUGGCUgcaCUGCGCAcaGUGUGGgGCc -3'
miRNA:   3'- agCACCGG---GACGUGUugCACGCCgUG- -5'
19238 3' -58.7 NC_004684.1 + 58422 0.67 0.513571
Target:  5'- uUCGUgauGGCCUcGCACAGCaucuccaccgGCGGCAg -3'
miRNA:   3'- -AGCA---CCGGGaCGUGUUGca--------CGCCGUg -5'
19238 3' -58.7 NC_004684.1 + 58346 0.72 0.253582
Target:  5'- -gGUGGCCCUGCugG-CGuUGCcGCGCc -3'
miRNA:   3'- agCACCGGGACGugUuGC-ACGcCGUG- -5'
19238 3' -58.7 NC_004684.1 + 57684 0.67 0.524837
Target:  5'- -gGUGGCCaucggccaggcauggCUGCGCAACGagauggccaaggacUgGUGGCACg -3'
miRNA:   3'- agCACCGG---------------GACGUGUUGC--------------A-CGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 57505 0.71 0.294074
Target:  5'- cUCGUcGGCggccugcuCCUGCGCGGCGUcgggauccgGCGGCAg -3'
miRNA:   3'- -AGCA-CCG--------GGACGUGUUGCA---------CGCCGUg -5'
19238 3' -58.7 NC_004684.1 + 57264 0.67 0.472516
Target:  5'- cCGUcGGCCC-GCACAGCucggccuGUGaCGGCGa -3'
miRNA:   3'- aGCA-CCGGGaCGUGUUG-------CAC-GCCGUg -5'
19238 3' -58.7 NC_004684.1 + 57064 0.66 0.586636
Target:  5'- gUCGaUGGCggCCUGCGuuGCG-GCGcGCACa -3'
miRNA:   3'- -AGC-ACCG--GGACGUguUGCaCGC-CGUG- -5'
19238 3' -58.7 NC_004684.1 + 56993 0.72 0.246055
Target:  5'- gCGUGGUUCUGCACGcugGCGgccugguacccgGCGGUGCg -3'
miRNA:   3'- aGCACCGGGACGUGU---UGCa-----------CGCCGUG- -5'
19238 3' -58.7 NC_004684.1 + 56154 0.79 0.084911
Target:  5'- gCGUGGCCCUgGCcgACGACGgcgacgacgGCGGCGCu -3'
miRNA:   3'- aGCACCGGGA-CG--UGUUGCa--------CGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.