miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19241 5' -62.3 NC_004684.1 + 62776 0.66 0.473591
Target:  5'- uGGUUgugGUugGUGCCuGCCCGGcG-GGg -3'
miRNA:   3'- gCCGGa--CAugCGCGGcUGGGCC-CaCC- -5'
19241 5' -62.3 NC_004684.1 + 42526 0.66 0.473591
Target:  5'- gCGGCUUGauggGgGUGCCGaacgGCCC-GGUGGc -3'
miRNA:   3'- -GCCGGACa---UgCGCGGC----UGGGcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 31205 0.66 0.464266
Target:  5'- gGGCCUGgaagACGaccugGCCGACgCC-GGUGa -3'
miRNA:   3'- gCCGGACa---UGCg----CGGCUG-GGcCCACc -5'
19241 5' -62.3 NC_004684.1 + 2733 0.66 0.464266
Target:  5'- gGuGCCgcUGCGCGCCGACaUCGcGGUGc -3'
miRNA:   3'- gC-CGGacAUGCGCGGCUG-GGC-CCACc -5'
19241 5' -62.3 NC_004684.1 + 60078 0.66 0.455037
Target:  5'- gCGGCCcGUGCGgGCCuuCaCCGGGc-- -3'
miRNA:   3'- -GCCGGaCAUGCgCGGcuG-GGCCCacc -5'
19241 5' -62.3 NC_004684.1 + 1281 0.66 0.455037
Target:  5'- uGGCCauguuccgGUACGCGCgCGACgCGuGGccGGa -3'
miRNA:   3'- gCCGGa-------CAUGCGCG-GCUGgGC-CCa-CC- -5'
19241 5' -62.3 NC_004684.1 + 22014 0.66 0.455037
Target:  5'- gGGCCgGUGCuCGCCGACCUGa---- -3'
miRNA:   3'- gCCGGaCAUGcGCGGCUGGGCccacc -5'
19241 5' -62.3 NC_004684.1 + 9007 0.66 0.455037
Target:  5'- aGGCCUccACGCGCgGugCCGuGcGGg -3'
miRNA:   3'- gCCGGAcaUGCGCGgCugGGCcCaCC- -5'
19241 5' -62.3 NC_004684.1 + 22233 0.66 0.455037
Target:  5'- uGGaCCUGgaggACGCcgucgacuucGCCGagGCCUGGGUGu -3'
miRNA:   3'- gCC-GGACa---UGCG----------CGGC--UGGGCCCACc -5'
19241 5' -62.3 NC_004684.1 + 30137 0.66 0.445909
Target:  5'- aGGCaccgcgcagUGUGCGCGUCGGCCa--GUGGg -3'
miRNA:   3'- gCCGg--------ACAUGCGCGGCUGGgccCACC- -5'
19241 5' -62.3 NC_004684.1 + 41135 0.66 0.442286
Target:  5'- uGGUCUgaucauccucugggGUAcgcCGCGCCgGACCCgcgcgcgGGGUGGa -3'
miRNA:   3'- gCCGGA--------------CAU---GCGCGG-CUGGG-------CCCACC- -5'
19241 5' -62.3 NC_004684.1 + 20260 0.66 0.436884
Target:  5'- cCGGCCcg-GCGCGuucCCGGCCCcuGUGGu -3'
miRNA:   3'- -GCCGGacaUGCGC---GGCUGGGccCACC- -5'
19241 5' -62.3 NC_004684.1 + 61537 0.66 0.436884
Target:  5'- aGGCgCUG-GCGUGCCGcugguuggUCCGGGUGcGg -3'
miRNA:   3'- gCCG-GACaUGCGCGGCu-------GGGCCCAC-C- -5'
19241 5' -62.3 NC_004684.1 + 55904 0.66 0.427964
Target:  5'- uGGCCUGuUAC-CGCCGgagcuggugGCCaaGGUGGa -3'
miRNA:   3'- gCCGGAC-AUGcGCGGC---------UGGgcCCACC- -5'
19241 5' -62.3 NC_004684.1 + 16515 0.66 0.427964
Target:  5'- gGuGCC-GUAUGCGCCGcaguCCUGGGgugUGGc -3'
miRNA:   3'- gC-CGGaCAUGCGCGGCu---GGGCCC---ACC- -5'
19241 5' -62.3 NC_004684.1 + 42000 0.66 0.427964
Target:  5'- uGGCCgccgcUGUGCGCGgCGGCguaggcgcugaCCGGGUc- -3'
miRNA:   3'- gCCGG-----ACAUGCGCgGCUG-----------GGCCCAcc -5'
19241 5' -62.3 NC_004684.1 + 7352 0.67 0.419153
Target:  5'- -cGCCgGUGCGCGCCGuggagaacgcAUCCGagcugugcuGGUGGa -3'
miRNA:   3'- gcCGGaCAUGCGCGGC----------UGGGC---------CCACC- -5'
19241 5' -62.3 NC_004684.1 + 24521 0.67 0.410453
Target:  5'- aGGCCgg-GCGUGCggCGGCCUGGuUGGc -3'
miRNA:   3'- gCCGGacaUGCGCG--GCUGGGCCcACC- -5'
19241 5' -62.3 NC_004684.1 + 18048 0.67 0.410453
Target:  5'- gGGCCUGaucccgucaGCGCCGACCauggccgccgaCGGGUc- -3'
miRNA:   3'- gCCGGACaug------CGCGGCUGG-----------GCCCAcc -5'
19241 5' -62.3 NC_004684.1 + 43416 0.67 0.401866
Target:  5'- aCGGCUUGaGCGaGCCG-UCCGGGUu- -3'
miRNA:   3'- -GCCGGACaUGCgCGGCuGGGCCCAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.