miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19243 5' -59.1 NC_004684.1 + 4433 0.66 0.585515
Target:  5'- cGCGC-GGGCCUGcuGGCG-CaGCUGGa -3'
miRNA:   3'- aCGUGaCCUGGACc-UCGCuGgCGACC- -5'
19243 5' -59.1 NC_004684.1 + 21761 0.66 0.585515
Target:  5'- cGCGCUGcGCCUGuuccccggcaaGAcCGACgCGCUGGu -3'
miRNA:   3'- aCGUGACcUGGAC-----------CUcGCUG-GCGACC- -5'
19243 5' -59.1 NC_004684.1 + 13562 0.66 0.585515
Target:  5'- uUGCACUccaGCCUGGaAGCGcacgcCCGCaUGGa -3'
miRNA:   3'- -ACGUGAcc-UGGACC-UCGCu----GGCG-ACC- -5'
19243 5' -59.1 NC_004684.1 + 41874 0.66 0.584465
Target:  5'- gGUACUGGACgCaGGcccGCGACaugaacgCGCUGGc -3'
miRNA:   3'- aCGUGACCUG-GaCCu--CGCUG-------GCGACC- -5'
19243 5' -59.1 NC_004684.1 + 5934 0.66 0.579221
Target:  5'- cGCGCUGGccaccgggcgguccaACCUGGccgcgccggugAGCGACCGg--- -3'
miRNA:   3'- aCGUGACC---------------UGGACC-----------UCGCUGGCgacc -5'
19243 5' -59.1 NC_004684.1 + 27810 0.66 0.575033
Target:  5'- gGUcCUGGccugcuCCUGGugGGCGACUccuGCUGGg -3'
miRNA:   3'- aCGuGACCu-----GGACC--UCGCUGG---CGACC- -5'
19243 5' -59.1 NC_004684.1 + 19483 0.66 0.575033
Target:  5'- aUGCGCc---CCUGGAGCcaGCCGCUGc -3'
miRNA:   3'- -ACGUGaccuGGACCUCGc-UGGCGACc -5'
19243 5' -59.1 NC_004684.1 + 58085 0.66 0.564594
Target:  5'- gUGCAgCUcGACCgGGAGCGcGCCGagcaUGGc -3'
miRNA:   3'- -ACGU-GAcCUGGaCCUCGC-UGGCg---ACC- -5'
19243 5' -59.1 NC_004684.1 + 44730 0.66 0.563553
Target:  5'- cGCuuCUGcGGCCuucuccaggucuuUGGGGUcGCCGCUGGc -3'
miRNA:   3'- aCGu-GAC-CUGG-------------ACCUCGcUGGCGACC- -5'
19243 5' -59.1 NC_004684.1 + 23257 0.66 0.558355
Target:  5'- aGCGcCUGGugCUcaacgacgcgggcgaGGAGCGcguggucgGCaCGCUGGa -3'
miRNA:   3'- aCGU-GACCugGA---------------CCUCGC--------UG-GCGACC- -5'
19243 5' -59.1 NC_004684.1 + 7834 0.66 0.554206
Target:  5'- aUGCGCUGGugCgacaacGGCG-CgCGCUGGc -3'
miRNA:   3'- -ACGUGACCugGacc---UCGCuG-GCGACC- -5'
19243 5' -59.1 NC_004684.1 + 35994 0.66 0.554206
Target:  5'- gGCGCguuGGCCUGGuuGGCGAgCGUgaUGGu -3'
miRNA:   3'- aCGUGac-CUGGACC--UCGCUgGCG--ACC- -5'
19243 5' -59.1 NC_004684.1 + 24486 0.66 0.543874
Target:  5'- cGCGCUaccGCCgGGGGCGguGCCGCaGGg -3'
miRNA:   3'- aCGUGAcc-UGGaCCUCGC--UGGCGaCC- -5'
19243 5' -59.1 NC_004684.1 + 6073 0.66 0.543874
Target:  5'- cGCGCUGGuagccgauGCCgGGGGCGGCCu---- -3'
miRNA:   3'- aCGUGACC--------UGGaCCUCGCUGGcgacc -5'
19243 5' -59.1 NC_004684.1 + 19736 0.66 0.543874
Target:  5'- aGCGC-GGcACCUGGAGCGugCaGUa-- -3'
miRNA:   3'- aCGUGaCC-UGGACCUCGCugG-CGacc -5'
19243 5' -59.1 NC_004684.1 + 31006 0.67 0.523409
Target:  5'- cGCAgCUGGGCCUGacGcCGACCGgUGa -3'
miRNA:   3'- aCGU-GACCUGGACcuC-GCUGGCgACc -5'
19243 5' -59.1 NC_004684.1 + 3496 0.67 0.523409
Target:  5'- gGUAcCUGGACCaccuGGC-ACCGCUGGg -3'
miRNA:   3'- aCGU-GACCUGGacc-UCGcUGGCGACC- -5'
19243 5' -59.1 NC_004684.1 + 29097 0.67 0.520364
Target:  5'- aGC-CUGG-CCUGGAGCcgugagcugcgccaGACCagcacgugcgaGCUGGu -3'
miRNA:   3'- aCGuGACCuGGACCUCG--------------CUGG-----------CGACC- -5'
19243 5' -59.1 NC_004684.1 + 49659 0.67 0.513288
Target:  5'- cGCGCcGGAUUccGGGCGACCGCa-- -3'
miRNA:   3'- aCGUGaCCUGGacCUCGCUGGCGacc -5'
19243 5' -59.1 NC_004684.1 + 9467 0.67 0.513287
Target:  5'- gGCGCUGGAgCUGGcgggcaAGCGcaGCCGUa-- -3'
miRNA:   3'- aCGUGACCUgGACC------UCGC--UGGCGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.