miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19245 3' -56.5 NC_004684.1 + 6080 0.66 0.750212
Target:  5'- gGCGGCggcCCGGCGGcGGUGcuGCCGg -3'
miRNA:   3'- gCGUUGgauGGCUGCCaCCAC--UGGCa -5'
19245 3' -56.5 NC_004684.1 + 62448 0.66 0.750212
Target:  5'- uCGUAGuCCUGCCagcgcucCGGgaGGUGGCCGUu -3'
miRNA:   3'- -GCGUU-GGAUGGcu-----GCCa-CCACUGGCA- -5'
19245 3' -56.5 NC_004684.1 + 5323 0.66 0.740099
Target:  5'- gGCGACCgUGCagcaGugGGUGGcggugGGCUGa -3'
miRNA:   3'- gCGUUGG-AUGg---CugCCACCa----CUGGCa -5'
19245 3' -56.5 NC_004684.1 + 62487 0.66 0.740099
Target:  5'- uGguGCC-GCCGAggcCGGUGGcGACCa- -3'
miRNA:   3'- gCguUGGaUGGCU---GCCACCaCUGGca -5'
19245 3' -56.5 NC_004684.1 + 64945 0.66 0.733981
Target:  5'- aGC-GCCUgGCgGGCGGUGGcccgguucaggucgaUGACCGc -3'
miRNA:   3'- gCGuUGGA-UGgCUGCCACC---------------ACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 24753 0.66 0.729883
Target:  5'- uCGUGACCUGCUGGCaG-GGaaGACCGg -3'
miRNA:   3'- -GCGUUGGAUGGCUGcCaCCa-CUGGCa -5'
19245 3' -56.5 NC_004684.1 + 11979 0.66 0.729883
Target:  5'- cCGCGACCggcggcACCGACGGca-UGACCc- -3'
miRNA:   3'- -GCGUUGGa-----UGGCUGCCaccACUGGca -5'
19245 3' -56.5 NC_004684.1 + 38419 0.66 0.729883
Target:  5'- --gAACCUgGCCGauGCGGgGGUGACCa- -3'
miRNA:   3'- gcgUUGGA-UGGC--UGCCaCCACUGGca -5'
19245 3' -56.5 NC_004684.1 + 18345 0.66 0.726799
Target:  5'- gGCcgAGCCUGCCGaggaggaggagccuGCGccGGUGGCCGa -3'
miRNA:   3'- gCG--UUGGAUGGC--------------UGCcaCCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 4432 0.66 0.719575
Target:  5'- aCGCGcggGCCUGCUGGCGcagcUGGaGGCCGc -3'
miRNA:   3'- -GCGU---UGGAUGGCUGCc---ACCaCUGGCa -5'
19245 3' -56.5 NC_004684.1 + 66114 0.66 0.709186
Target:  5'- aCGCGACgCgUGCUGGCGaaGUGGUcGCCGg -3'
miRNA:   3'- -GCGUUG-G-AUGGCUGC--CACCAcUGGCa -5'
19245 3' -56.5 NC_004684.1 + 55555 0.66 0.709186
Target:  5'- cCGCuGGCC-GCCGugGcccGGUGGCCGg -3'
miRNA:   3'- -GCG-UUGGaUGGCugCca-CCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 42194 0.66 0.709186
Target:  5'- aGCAGuggGCCGugGaGcUGGUGGCCGa -3'
miRNA:   3'- gCGUUggaUGGCugC-C-ACCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 27740 0.66 0.709186
Target:  5'- aCGCGGag-GCCGGuaccUGGaGGUGACCGUg -3'
miRNA:   3'- -GCGUUggaUGGCU----GCCaCCACUGGCA- -5'
19245 3' -56.5 NC_004684.1 + 38813 0.66 0.708142
Target:  5'- gGCGgugcccGCCUGgcggugcCCGACGGccUGGUGGCCc- -3'
miRNA:   3'- gCGU------UGGAU-------GGCUGCC--ACCACUGGca -5'
19245 3' -56.5 NC_004684.1 + 22193 0.66 0.698725
Target:  5'- gGCGACCgccuucggACUGGCGcaGGUGGCCu- -3'
miRNA:   3'- gCGUUGGa-------UGGCUGCcaCCACUGGca -5'
19245 3' -56.5 NC_004684.1 + 2064 0.66 0.698725
Target:  5'- uCGUGGCCUGCCuGGCGcuggccGUGGUGcacagcgaggccGCCGUc -3'
miRNA:   3'- -GCGUUGGAUGG-CUGC------CACCAC------------UGGCA- -5'
19245 3' -56.5 NC_004684.1 + 28063 0.67 0.688203
Target:  5'- gGuCGGCC--CCGGCGGU-GUGGCCGg -3'
miRNA:   3'- gC-GUUGGauGGCUGCCAcCACUGGCa -5'
19245 3' -56.5 NC_004684.1 + 49198 0.67 0.688203
Target:  5'- gGCGGCCUGCuCGGucggccaguCGGUcGGUG-CCGg -3'
miRNA:   3'- gCGUUGGAUG-GCU---------GCCA-CCACuGGCa -5'
19245 3' -56.5 NC_004684.1 + 7122 0.67 0.688203
Target:  5'- aCGCAACCgccaccGCCGA-GGUacacccggaaGGUGGCCa- -3'
miRNA:   3'- -GCGUUGGa-----UGGCUgCCA----------CCACUGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.