miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19245 5' -60.6 NC_004684.1 + 19757 0.66 0.523018
Target:  5'- aGUACcuGCgCGGCCugCCGGUGcCCgcCGg -3'
miRNA:   3'- -CAUGc-CG-GUCGGugGGCCACuGGa-GC- -5'
19245 5' -60.6 NC_004684.1 + 913 0.66 0.523018
Target:  5'- ---aGGCCuagccGCCACCgGGUGGCggCGu -3'
miRNA:   3'- caugCCGGu----CGGUGGgCCACUGgaGC- -5'
19245 5' -60.6 NC_004684.1 + 58330 0.66 0.523018
Target:  5'- ---gGGUCAugGCgCGCCCGGUGGCCc-- -3'
miRNA:   3'- caugCCGGU--CG-GUGGGCCACUGGagc -5'
19245 5' -60.6 NC_004684.1 + 52272 0.66 0.523018
Target:  5'- ---aGGcCCAGCguCCCGGUGACggCa -3'
miRNA:   3'- caugCC-GGUCGguGGGCCACUGgaGc -5'
19245 5' -60.6 NC_004684.1 + 18615 0.66 0.523018
Target:  5'- ---aGGCCAGCgACUgggcgaccagCGGUGgACCUCu -3'
miRNA:   3'- caugCCGGUCGgUGG----------GCCAC-UGGAGc -5'
19245 5' -60.6 NC_004684.1 + 46418 0.66 0.523018
Target:  5'- -cACGGCCAGCauguCCCGGcGcAUCUgGa -3'
miRNA:   3'- caUGCCGGUCGgu--GGGCCaC-UGGAgC- -5'
19245 5' -60.6 NC_004684.1 + 22190 0.66 0.522014
Target:  5'- -gGCGGCgA-CCGCCUucggacuggcgcaGGUGGCCUCc -3'
miRNA:   3'- caUGCCGgUcGGUGGG-------------CCACUGGAGc -5'
19245 5' -60.6 NC_004684.1 + 42614 0.66 0.51301
Target:  5'- cGUAuCGaCCAGCgGCCCGGUG-CCg-- -3'
miRNA:   3'- -CAU-GCcGGUCGgUGGGCCACuGGagc -5'
19245 5' -60.6 NC_004684.1 + 41069 0.66 0.51301
Target:  5'- cGU-CGGCaauCGGCgGCCCGGcGGCCUgGc -3'
miRNA:   3'- -CAuGCCG---GUCGgUGGGCCaCUGGAgC- -5'
19245 5' -60.6 NC_004684.1 + 65444 0.66 0.51301
Target:  5'- cGUGCGGCgcgCGGCCACCgugcgcCGGUaccaGGCC-CGg -3'
miRNA:   3'- -CAUGCCG---GUCGGUGG------GCCA----CUGGaGC- -5'
19245 5' -60.6 NC_004684.1 + 40360 0.66 0.51301
Target:  5'- -gGCGGCCuuGGCC-UUgGG-GGCCUCGg -3'
miRNA:   3'- caUGCCGG--UCGGuGGgCCaCUGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 57010 0.66 0.51301
Target:  5'- -gGCGGCCuGgUACCCGGcggugcgcgcGAUCUCGc -3'
miRNA:   3'- caUGCCGGuCgGUGGGCCa---------CUGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 65577 0.66 0.51301
Target:  5'- cUGCGaGCaGGCCGaugacaCCGGcGACCUCGc -3'
miRNA:   3'- cAUGC-CGgUCGGUg-----GGCCaCUGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 28111 0.66 0.503081
Target:  5'- gGUGCGGUUcgaGGCCuugCUGGUGGCCUg- -3'
miRNA:   3'- -CAUGCCGG---UCGGug-GGCCACUGGAgc -5'
19245 5' -60.6 NC_004684.1 + 40459 0.66 0.503081
Target:  5'- -gGCGGCC-GCCugCuCGGgGGUCUCGg -3'
miRNA:   3'- caUGCCGGuCGGugG-GCCaCUGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 55302 0.66 0.503081
Target:  5'- -gAUGGCC-GCCGCgCGGgccaGcACCUCGu -3'
miRNA:   3'- caUGCCGGuCGGUGgGCCa---C-UGGAGC- -5'
19245 5' -60.6 NC_004684.1 + 1804 0.66 0.503081
Target:  5'- cGUGCGGCUcaugaccgaGGCCAUggCGGcUGACCUgCGg -3'
miRNA:   3'- -CAUGCCGG---------UCGGUGg-GCC-ACUGGA-GC- -5'
19245 5' -60.6 NC_004684.1 + 21888 0.66 0.502093
Target:  5'- -cAgGGCCAgGCCAUCgCGGUaugcccgacgugcGACCUCu -3'
miRNA:   3'- caUgCCGGU-CGGUGG-GCCA-------------CUGGAGc -5'
19245 5' -60.6 NC_004684.1 + 39033 0.66 0.502093
Target:  5'- cUACGGCuCGGCgguguccauugugCGCCgGGUGGCCagCGu -3'
miRNA:   3'- cAUGCCG-GUCG-------------GUGGgCCACUGGa-GC- -5'
19245 5' -60.6 NC_004684.1 + 7580 0.66 0.501105
Target:  5'- gGUGCGGCUggugcgcGGCaACCCGGUGgucguguACUUCa -3'
miRNA:   3'- -CAUGCCGG-------UCGgUGGGCCAC-------UGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.