miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19247 3' -53.5 NC_004684.1 + 66356 0.68 0.743928
Target:  5'- gCCG-CCAUUUcuggccccaCGCCGc-GAGCUGCGc -3'
miRNA:   3'- -GGCuGGUAAA---------GCGGCuaCUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 65765 0.69 0.680125
Target:  5'- uUGGCCGccgcgCGCCGGUGGGC-GCGc -3'
miRNA:   3'- gGCUGGUaaa--GCGGCUACUCGaCGCa -5'
19247 3' -53.5 NC_004684.1 + 65283 0.71 0.592883
Target:  5'- uCCGACCAcgccgCGCCGuaguGCUGCGc -3'
miRNA:   3'- -GGCUGGUaaa--GCGGCuacuCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 64924 0.67 0.822342
Target:  5'- gCGACCcagGUggCGgCGGUGAGCgccugGCGg -3'
miRNA:   3'- gGCUGG---UAaaGCgGCUACUCGa----CGCa -5'
19247 3' -53.5 NC_004684.1 + 63811 0.72 0.549744
Target:  5'- gCGACCGUggUGCUGGUGAuGgUGCGg -3'
miRNA:   3'- gGCUGGUAaaGCGGCUACU-CgACGCa -5'
19247 3' -53.5 NC_004684.1 + 63377 0.66 0.848778
Target:  5'- gCCGACgCGcca-GCCGAUG-GCgGCGUa -3'
miRNA:   3'- -GGCUG-GUaaagCGGCUACuCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 59191 0.67 0.822342
Target:  5'- cUCGACCAcg-CGCuUGAUcAGCUGCGc -3'
miRNA:   3'- -GGCUGGUaaaGCG-GCUAcUCGACGCa -5'
19247 3' -53.5 NC_004684.1 + 59023 0.7 0.625606
Target:  5'- cUCGugCuugUCGCCGGUGGGCaGCu- -3'
miRNA:   3'- -GGCugGuaaAGCGGCUACUCGaCGca -5'
19247 3' -53.5 NC_004684.1 + 58028 1.09 0.002154
Target:  5'- gCCGACCAUUUCGCCGAUGAGCUGCGUc -3'
miRNA:   3'- -GGCUGGUAAAGCGGCUACUCGACGCA- -5'
19247 3' -53.5 NC_004684.1 + 55823 0.67 0.822342
Target:  5'- gCGAgCAcggggUGCCGGUGAGCggguacUGCGUg -3'
miRNA:   3'- gGCUgGUaaa--GCGGCUACUCG------ACGCA- -5'
19247 3' -53.5 NC_004684.1 + 55797 0.7 0.647466
Target:  5'- gUGACCGggUgGuCCGGUGAGC-GCGUg -3'
miRNA:   3'- gGCUGGUaaAgC-GGCUACUCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 55319 0.7 0.636538
Target:  5'- gCCGAUCGagUUCGCCGAcggcuggcaggUGAGCcugGCGc -3'
miRNA:   3'- -GGCUGGUa-AAGCGGCU-----------ACUCGa--CGCa -5'
19247 3' -53.5 NC_004684.1 + 51045 0.66 0.857154
Target:  5'- gCGGCCAc--CGCCGGUGAcgaUGCGc -3'
miRNA:   3'- gGCUGGUaaaGCGGCUACUcg-ACGCa -5'
19247 3' -53.5 NC_004684.1 + 50107 0.67 0.813123
Target:  5'- cCCGGCCAgaaaaccagCGCCGccGAGCaguUGCa- -3'
miRNA:   3'- -GGCUGGUaaa------GCGGCuaCUCG---ACGca -5'
19247 3' -53.5 NC_004684.1 + 49866 0.68 0.751157
Target:  5'- gCGACCAcgUCGuCCGGcgUggcaccgcgcucgcGAGCUGCGUa -3'
miRNA:   3'- gGCUGGUaaAGC-GGCU--A--------------CUCGACGCA- -5'
19247 3' -53.5 NC_004684.1 + 48934 0.68 0.754237
Target:  5'- cCCGGCCucgUCGCCGAacGGCacgucgGCGg -3'
miRNA:   3'- -GGCUGGuaaAGCGGCUacUCGa-----CGCa -5'
19247 3' -53.5 NC_004684.1 + 47706 0.67 0.804665
Target:  5'- cUCGGCCAggccuugccgccgCGCCGGUaGAGC-GCGUu -3'
miRNA:   3'- -GGCUGGUaaa----------GCGGCUA-CUCGaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 47316 0.68 0.764423
Target:  5'- gCCGucACCGUgUCGCCGGUGuGg-GCGUc -3'
miRNA:   3'- -GGC--UGGUAaAGCGGCUACuCgaCGCA- -5'
19247 3' -53.5 NC_004684.1 + 43726 0.67 0.822342
Target:  5'- gCCGACCAggcCGUCGGUGuacccggucAGCaGCGg -3'
miRNA:   3'- -GGCUGGUaaaGCGGCUAC---------UCGaCGCa -5'
19247 3' -53.5 NC_004684.1 + 42320 0.75 0.394638
Target:  5'- gUCGGCCAcgUUGCCGGUgcgcgcgaacuucugGAGCUGCGc -3'
miRNA:   3'- -GGCUGGUaaAGCGGCUA---------------CUCGACGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.