miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19250 3' -61.3 NC_004684.1 + 30049 0.66 0.495883
Target:  5'- gCUCGCCggucgguuGCGGCGGGCuuuccagguaggcaaUGGCcaugCUgGACg -3'
miRNA:   3'- -GGGCGG--------UGCCGCUCG---------------ACCGa---GAgCUG- -5'
19250 3' -61.3 NC_004684.1 + 64391 0.66 0.491987
Target:  5'- aCCUGUgugCACGGCGcGGUgaUGGC-CUCGAa -3'
miRNA:   3'- -GGGCG---GUGCCGC-UCG--ACCGaGAGCUg -5'
19250 3' -61.3 NC_004684.1 + 44222 0.66 0.491987
Target:  5'- uCuuGCCGauGuUGAGCaGGCUCUCGcCa -3'
miRNA:   3'- -GggCGGUgcC-GCUCGaCCGAGAGCuG- -5'
19250 3' -61.3 NC_004684.1 + 63519 0.66 0.491987
Target:  5'- gCgGCCugGcgucgcagcucGCGGGCgUGGCgCUCGGCc -3'
miRNA:   3'- gGgCGGugC-----------CGCUCG-ACCGaGAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 48067 0.66 0.491987
Target:  5'- cUCgGCCACGGCG-GC-GGCguaugCGGCc -3'
miRNA:   3'- -GGgCGGUGCCGCuCGaCCGaga--GCUG- -5'
19250 3' -61.3 NC_004684.1 + 37429 0.66 0.491016
Target:  5'- aCCGCCACGGUGGuggcaccGgaGGUgacCGACa -3'
miRNA:   3'- gGGCGGUGCCGCU-------CgaCCGagaGCUG- -5'
19250 3' -61.3 NC_004684.1 + 13367 0.66 0.482311
Target:  5'- aCCCGCCACgaaGGcCGAGgaGGCacaacgugaUCcagCGACc -3'
miRNA:   3'- -GGGCGGUG---CC-GCUCgaCCG---------AGa--GCUG- -5'
19250 3' -61.3 NC_004684.1 + 48111 0.66 0.482311
Target:  5'- cUCCGUCGCcaGGUG-GCUccGGCUC-CGGCg -3'
miRNA:   3'- -GGGCGGUG--CCGCuCGA--CCGAGaGCUG- -5'
19250 3' -61.3 NC_004684.1 + 61490 0.66 0.482311
Target:  5'- gUCGCCGCgcaGGCG-GC-GGCgCUCGAUg -3'
miRNA:   3'- gGGCGGUG---CCGCuCGaCCGaGAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 18561 0.66 0.479425
Target:  5'- -aCGCgACGGCGGccgaggucaagaccGCgcuggUGGCUCUgGACg -3'
miRNA:   3'- ggGCGgUGCCGCU--------------CG-----ACCGAGAgCUG- -5'
19250 3' -61.3 NC_004684.1 + 57868 0.66 0.472726
Target:  5'- aCCaGCuCGCGGuCGgaAGCUGGCgcagCUCGuACg -3'
miRNA:   3'- gGG-CG-GUGCC-GC--UCGACCGa---GAGC-UG- -5'
19250 3' -61.3 NC_004684.1 + 26049 0.66 0.472726
Target:  5'- gCgGCCaggGCGGCGAGUUcgaGGCcaacacCUCGGCg -3'
miRNA:   3'- gGgCGG---UGCCGCUCGA---CCGa-----GAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 23037 0.66 0.472726
Target:  5'- uCCUGCCACgccuuGGUGAcggccuggccaaGCUGGCcaaccggUUCGACg -3'
miRNA:   3'- -GGGCGGUG-----CCGCU------------CGACCGa------GAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 29120 0.66 0.472726
Target:  5'- -gCGCCagaccagcACGuGCGAGCUGGUggugC-CGACg -3'
miRNA:   3'- ggGCGG--------UGC-CGCUCGACCGa---GaGCUG- -5'
19250 3' -61.3 NC_004684.1 + 1682 0.66 0.463239
Target:  5'- gCCCaCCA-GGcCGAGCUGGCgcgcaUCGAg -3'
miRNA:   3'- -GGGcGGUgCC-GCUCGACCGag---AGCUg -5'
19250 3' -61.3 NC_004684.1 + 11524 0.66 0.463239
Target:  5'- aCCGCU-CGGUGGGCcugGGCcacaUCGACc -3'
miRNA:   3'- gGGCGGuGCCGCUCGa--CCGag--AGCUG- -5'
19250 3' -61.3 NC_004684.1 + 49655 0.66 0.463239
Target:  5'- aCCGaCCACGGCGuGGaCUcGGCccaUUCGGCg -3'
miRNA:   3'- gGGC-GGUGCCGC-UC-GA-CCGa--GAGCUG- -5'
19250 3' -61.3 NC_004684.1 + 5390 0.66 0.463239
Target:  5'- cCCCGUCgcgauugugcGCGGCGGGUgcgggUGGCUCaugguguacacCGACg -3'
miRNA:   3'- -GGGCGG----------UGCCGCUCG-----ACCGAGa----------GCUG- -5'
19250 3' -61.3 NC_004684.1 + 4185 0.66 0.457595
Target:  5'- -gCGCC-CGGCGGGCgcggUGGUUCUgaucaccgccagccaCGACu -3'
miRNA:   3'- ggGCGGuGCCGCUCG----ACCGAGA---------------GCUG- -5'
19250 3' -61.3 NC_004684.1 + 4629 0.66 0.453853
Target:  5'- gCCCGCCGCaGGaGGGCaaguccaccaUGGC-CUCGGu -3'
miRNA:   3'- -GGGCGGUG-CCgCUCG----------ACCGaGAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.