miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19251 3' -59.5 NC_004684.1 + 6144 0.66 0.574073
Target:  5'- uCGUUGaGCaguucgacGGCGGCgGCcagCGUGCgGCg -3'
miRNA:   3'- -GCAACaCGa-------CCGCCG-CGa--GCACGgCG- -5'
19251 3' -59.5 NC_004684.1 + 5534 0.66 0.563675
Target:  5'- -----aGCUGGUggaugaGGCGCagaaCGUGCUGCg -3'
miRNA:   3'- gcaacaCGACCG------CCGCGa---GCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 66501 0.66 0.563675
Target:  5'- -cUUG-GC-GGCGGC-CUCGcggGCCGCc -3'
miRNA:   3'- gcAACaCGaCCGCCGcGAGCa--CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 1480 0.66 0.562638
Target:  5'- aCGUgcccgGUGC-GGCGGCcCUgGUggccaaccugcgcGCCGCg -3'
miRNA:   3'- -GCAa----CACGaCCGCCGcGAgCA-------------CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 9253 0.66 0.559529
Target:  5'- -----cGCUGGCGGUGCUCauccccgagcugGCCGa -3'
miRNA:   3'- gcaacaCGACCGCCGCGAGca----------CGGCg -5'
19251 3' -59.5 NC_004684.1 + 57425 0.66 0.553327
Target:  5'- cCGgUGUGCacGGCGGCGUuaggaUCG-GgCGCa -3'
miRNA:   3'- -GCaACACGa-CCGCCGCG-----AGCaCgGCG- -5'
19251 3' -59.5 NC_004684.1 + 44666 0.66 0.543037
Target:  5'- cCGcUGcUGC-GGCGGCGCgaugcCGaUGUCGCu -3'
miRNA:   3'- -GCaAC-ACGaCCGCCGCGa----GC-ACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 29133 0.66 0.543037
Target:  5'- aCGUgcgaGCUGGUGGUGC-CGacgcaguucGCCGCg -3'
miRNA:   3'- -GCAaca-CGACCGCCGCGaGCa--------CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 39944 0.66 0.543037
Target:  5'- cCGccgGUGgUGGCaccGCGCUCcaaUGCCGCc -3'
miRNA:   3'- -GCaa-CACgACCGc--CGCGAGc--ACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 5898 0.66 0.531792
Target:  5'- gGUg--GC-GGCGGCGCUgaucgcgcacgacCGgcugGCCGCg -3'
miRNA:   3'- gCAacaCGaCCGCCGCGA-------------GCa---CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 63538 0.66 0.522654
Target:  5'- -----cGCgGGCguGGCGCUCGgccuccucgGCCGCu -3'
miRNA:   3'- gcaacaCGaCCG--CCGCGAGCa--------CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 17278 0.66 0.522654
Target:  5'- ----cUGCUcGGCGGCGCUgGUuuucuggccgggGUCGCg -3'
miRNA:   3'- gcaacACGA-CCGCCGCGAgCA------------CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 43437 0.67 0.512572
Target:  5'- gGUUGUacagGCUcGGCaGGCGg--GUGCCGCg -3'
miRNA:   3'- gCAACA----CGA-CCG-CCGCgagCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 33231 0.67 0.512572
Target:  5'- gGgcGUGCcGGUGaGCaGCacCGUGCCGCc -3'
miRNA:   3'- gCaaCACGaCCGC-CG-CGa-GCACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 5881 0.67 0.512572
Target:  5'- aCGUcacUGCUGGC-GCGCaUCGagcGCCGCc -3'
miRNA:   3'- -GCAac-ACGACCGcCGCG-AGCa--CGGCG- -5'
19251 3' -59.5 NC_004684.1 + 65316 0.67 0.502572
Target:  5'- aGUUGcgaGCUGGC-GCGCUccaccaCGUGgCGCu -3'
miRNA:   3'- gCAACa--CGACCGcCGCGA------GCACgGCG- -5'
19251 3' -59.5 NC_004684.1 + 17644 0.67 0.502572
Target:  5'- -----cGCUGGU-GCGCUCcGUGCCGa -3'
miRNA:   3'- gcaacaCGACCGcCGCGAG-CACGGCg -5'
19251 3' -59.5 NC_004684.1 + 20444 0.67 0.502572
Target:  5'- gCGcUGUGCacGGCGGCGaa-GaUGCUGCg -3'
miRNA:   3'- -GCaACACGa-CCGCCGCgagC-ACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 41428 0.67 0.502572
Target:  5'- cCGUg--GC-GGUGGUGCggcgGUGCCGCc -3'
miRNA:   3'- -GCAacaCGaCCGCCGCGag--CACGGCG- -5'
19251 3' -59.5 NC_004684.1 + 52231 0.67 0.502572
Target:  5'- ---gGUGCgUGGCGGCGg-CGgccaGCUGCg -3'
miRNA:   3'- gcaaCACG-ACCGCCGCgaGCa---CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.