miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19252 5' -61.2 NC_004684.1 + 56183 0.66 0.488957
Target:  5'- gGCGGcGCUa---UCGa-GCGCCCGGUGg -3'
miRNA:   3'- -CGUC-CGAcuagAGCggCGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 11164 0.66 0.479262
Target:  5'- cGCAGGCUGAcCgccugcaugCGCCGCuCCCa--- -3'
miRNA:   3'- -CGUCCGACUaGa--------GCGGCGcGGGccac -5'
19252 5' -61.2 NC_004684.1 + 64988 0.66 0.479262
Target:  5'- cGCGGGuCUGcggCUCGCCaGCGgCguUGGUGg -3'
miRNA:   3'- -CGUCC-GACua-GAGCGG-CGCgG--GCCAC- -5'
19252 5' -61.2 NC_004684.1 + 62401 0.66 0.479262
Target:  5'- cCGGGCccuUGcccUCgCGCUGCGCCCaGGUGc -3'
miRNA:   3'- cGUCCG---ACu--AGaGCGGCGCGGG-CCAC- -5'
19252 5' -61.2 NC_004684.1 + 48707 0.66 0.479262
Target:  5'- uGCuGGCUGAUgguuacCGUCGCGCCCa--- -3'
miRNA:   3'- -CGuCCGACUAga----GCGGCGCGGGccac -5'
19252 5' -61.2 NC_004684.1 + 55478 0.66 0.479262
Target:  5'- gGCccuGGCUG-UCgguggUGCCGCGCacguugaaucCCGGUGu -3'
miRNA:   3'- -CGu--CCGACuAGa----GCGGCGCG----------GGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 42523 0.66 0.479262
Target:  5'- gGCGcGGCuUGAUgggggUGCCGaacgGCCCGGUGg -3'
miRNA:   3'- -CGU-CCG-ACUAga---GCGGCg---CGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 39140 0.66 0.479262
Target:  5'- cCAGGCUGGccgggUCcaccgCGCUGUGCuCCgGGUGg -3'
miRNA:   3'- cGUCCGACU-----AGa----GCGGCGCG-GG-CCAC- -5'
19252 5' -61.2 NC_004684.1 + 58462 0.66 0.477334
Target:  5'- uGCccGCUGAggccagcgcgaaCUUGCCGCGCCCGc-- -3'
miRNA:   3'- -CGucCGACUa-----------GAGCGGCGCGGGCcac -5'
19252 5' -61.2 NC_004684.1 + 27284 0.66 0.476372
Target:  5'- cCGGGCUGAUCagcacccuguucggUgGCC-UGCUCGGUGc -3'
miRNA:   3'- cGUCCGACUAG--------------AgCGGcGCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 5046 0.66 0.469663
Target:  5'- cGCAGGCUGG-CgcgCGCUGUGCuggaggccuCCGGc- -3'
miRNA:   3'- -CGUCCGACUaGa--GCGGCGCG---------GGCCac -5'
19252 5' -61.2 NC_004684.1 + 42155 0.66 0.469663
Target:  5'- cGCAcGGCcuaugGGUCgagagCGCCGCacuGCgCGGUGa -3'
miRNA:   3'- -CGU-CCGa----CUAGa----GCGGCG---CGgGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 42087 0.66 0.469663
Target:  5'- -aGGGCcGA-CgaacCGCCGcCGCCUGGUGu -3'
miRNA:   3'- cgUCCGaCUaGa---GCGGC-GCGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 25516 0.66 0.460163
Target:  5'- aGC-GGCUGuUCUCGaCCGCcgacGCCgGGUc -3'
miRNA:   3'- -CGuCCGACuAGAGC-GGCG----CGGgCCAc -5'
19252 5' -61.2 NC_004684.1 + 7582 0.66 0.460163
Target:  5'- uGC-GGCUGGUg-CGCgGCaaCCCGGUGg -3'
miRNA:   3'- -CGuCCGACUAgaGCGgCGc-GGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 5945 0.66 0.460163
Target:  5'- cCGGGC-GGUCcaaccUgGCCGCGCC-GGUGa -3'
miRNA:   3'- cGUCCGaCUAG-----AgCGGCGCGGgCCAC- -5'
19252 5' -61.2 NC_004684.1 + 48356 0.66 0.450765
Target:  5'- aCGGGC-GGUCUCGgaGUGCuugCCGGUGu -3'
miRNA:   3'- cGUCCGaCUAGAGCggCGCG---GGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 19065 0.66 0.450765
Target:  5'- gGCAGGCUGGcgucCUCggaggugaggcaGUCGCaUCCGGUGg -3'
miRNA:   3'- -CGUCCGACUa---GAG------------CGGCGcGGGCCAC- -5'
19252 5' -61.2 NC_004684.1 + 16020 0.66 0.450765
Target:  5'- cGguGGCgUGGUCgUUGaCGUGCCCGGc- -3'
miRNA:   3'- -CguCCG-ACUAG-AGCgGCGCGGGCCac -5'
19252 5' -61.2 NC_004684.1 + 65898 0.66 0.447967
Target:  5'- cGCAGGUUGGccaccagggC-CGCCGCaccgggcacguccgGCCCGGUc -3'
miRNA:   3'- -CGUCCGACUa--------GaGCGGCG--------------CGGGCCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.