miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 3' -56.8 NC_004684.1 + 39073 0.66 0.684403
Target:  5'- gUCAACAcgaucAUGaaGGCCGGUGGUGccuacGCAc -3'
miRNA:   3'- -AGUUGU-----UAUgcCCGGCCACCGC-----CGUa -5'
19254 3' -56.8 NC_004684.1 + 55810 0.66 0.673626
Target:  5'- --cGCAccgGCGGGCUGGUGuggaacucGCGGUAg -3'
miRNA:   3'- aguUGUua-UGCCCGGCCAC--------CGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 59449 0.66 0.673626
Target:  5'- cCAcCGGUGUGcGCCGGUcGGCGGCGa -3'
miRNA:   3'- aGUuGUUAUGCcCGGCCA-CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 25017 0.66 0.673626
Target:  5'- cUCAGCGccgGUGCa-GCUGGaGGCGGCAUc -3'
miRNA:   3'- -AGUUGU---UAUGccCGGCCaCCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 66526 0.66 0.662811
Target:  5'- uUCAGCGcggcccgGCGGGCaCGGcGGUaGGCGUu -3'
miRNA:   3'- -AGUUGUua-----UGCCCG-GCCaCCG-CCGUA- -5'
19254 3' -56.8 NC_004684.1 + 57881 0.66 0.662811
Target:  5'- cCAGacCGGUGCuGGCUGGUGGCcgGGCu- -3'
miRNA:   3'- aGUU--GUUAUGcCCGGCCACCG--CCGua -5'
19254 3' -56.8 NC_004684.1 + 52873 0.66 0.662811
Target:  5'- gCAcCGGUACauGCCGGUGGCaGCAc -3'
miRNA:   3'- aGUuGUUAUGccCGGCCACCGcCGUa -5'
19254 3' -56.8 NC_004684.1 + 23967 0.66 0.662811
Target:  5'- cUCGGCcucgcCGGGCCucgGGUucGGCGGCGg -3'
miRNA:   3'- -AGUUGuuau-GCCCGG---CCA--CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 48951 0.66 0.651968
Target:  5'- aCGGCAcgucgGCGGGCgGgGUGGCcggGGCGg -3'
miRNA:   3'- aGUUGUua---UGCCCGgC-CACCG---CCGUa -5'
19254 3' -56.8 NC_004684.1 + 66138 0.66 0.641107
Target:  5'- cCAGCGcAUcUGGGCCGG-GGCcgGGCGa -3'
miRNA:   3'- aGUUGU-UAuGCCCGGCCaCCG--CCGUa -5'
19254 3' -56.8 NC_004684.1 + 51510 0.66 0.641107
Target:  5'- gCGGCugcacaGGGCCGcUGGCGGCc- -3'
miRNA:   3'- aGUUGuuaug-CCCGGCcACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 25806 0.66 0.641107
Target:  5'- gUCAcCA--ACuGGCCgGGUGGCGGCc- -3'
miRNA:   3'- -AGUuGUuaUGcCCGG-CCACCGCCGua -5'
19254 3' -56.8 NC_004684.1 + 18116 0.66 0.641107
Target:  5'- -aAGCAGUACGGcuaccuGCUGcugGGCGGCAa -3'
miRNA:   3'- agUUGUUAUGCC------CGGCca-CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 48393 0.66 0.630238
Target:  5'- aUCAGCAcccCGGcGuuGGUguGGCGGCGa -3'
miRNA:   3'- -AGUUGUuauGCC-CggCCA--CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 43448 0.66 0.630238
Target:  5'- gUCggUGcgGCGGGCgCGGcagcaggugcGGCGGCAg -3'
miRNA:   3'- -AGuuGUuaUGCCCG-GCCa---------CCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 23760 0.66 0.630238
Target:  5'- --cGCAGUuCGGGCCGuGggGcGCGGCGUu -3'
miRNA:   3'- aguUGUUAuGCCCGGC-Ca-C-CGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 33884 0.66 0.630238
Target:  5'- -aGGCGGUGCGGG-CGGUGcCGGUg- -3'
miRNA:   3'- agUUGUUAUGCCCgGCCACcGCCGua -5'
19254 3' -56.8 NC_004684.1 + 3041 0.66 0.630238
Target:  5'- --cGCAcaACGaGGCCcgGGUGGUGGCGc -3'
miRNA:   3'- aguUGUuaUGC-CCGG--CCACCGCCGUa -5'
19254 3' -56.8 NC_004684.1 + 54277 0.67 0.619371
Target:  5'- -aAGCugccGCGcuGGCCGGUggGGCGGCGUg -3'
miRNA:   3'- agUUGuua-UGC--CCGGCCA--CCGCCGUA- -5'
19254 3' -56.8 NC_004684.1 + 49219 0.67 0.608515
Target:  5'- gUCGGuCGGUGcCGGGCCGGgcguCGGCAc -3'
miRNA:   3'- -AGUU-GUUAU-GCCCGGCCacc-GCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.