miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19254 5' -61.6 NC_004684.1 + 8867 0.83 0.033031
Target:  5'- cCAACGCCGCCGCCaacGGcacgcuggaccgcagUCGGCGCGGCa -3'
miRNA:   3'- -GUUGCGGCGGUGG---CC---------------AGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 10886 0.73 0.177828
Target:  5'- cCGACGCCGgugaCCACCcgGGUCGGCGCguacaGGCc -3'
miRNA:   3'- -GUUGCGGC----GGUGG--CCAGCUGCG-----CCGa -5'
19254 5' -61.6 NC_004684.1 + 4457 0.72 0.196801
Target:  5'- -cGCGCCGCgCGCUGGUCGGCuucgucacCGGCc -3'
miRNA:   3'- guUGCGGCG-GUGGCCAGCUGc-------GCCGa -5'
19254 5' -61.6 NC_004684.1 + 42099 0.66 0.481731
Target:  5'- --cCGCCGCCGCCuGGU-GugGCcggaaGGCc -3'
miRNA:   3'- guuGCGGCGGUGG-CCAgCugCG-----CCGa -5'
19254 5' -61.6 NC_004684.1 + 51569 0.75 0.114243
Target:  5'- gCGAUGCCgcgcGCCACCGGgucgcUCGGCGUGGUg -3'
miRNA:   3'- -GUUGCGG----CGGUGGCC-----AGCUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 40791 0.75 0.121725
Target:  5'- uGACGCCGCCGCCGGUggCGAacccgcgcacaccgcCGCGcGCc -3'
miRNA:   3'- gUUGCGGCGGUGGCCA--GCU---------------GCGC-CGa -5'
19254 5' -61.6 NC_004684.1 + 61474 0.75 0.126963
Target:  5'- cCAGCGCgGCCAgCCGGUCGuGCGCGaucaGCg -3'
miRNA:   3'- -GUUGCGgCGGU-GGCCAGC-UGCGC----CGa -5'
19254 5' -61.6 NC_004684.1 + 49043 0.74 0.136992
Target:  5'- gCAcCG-CGCCGCCGGUCGGCuccggggGCGGCa -3'
miRNA:   3'- -GUuGCgGCGGUGGCCAGCUG-------CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 61309 0.73 0.164259
Target:  5'- aCGAgGCCGCCcCCGGcaUCGgcuaccaGCGCGGCg -3'
miRNA:   3'- -GUUgCGGCGGuGGCC--AGC-------UGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 18071 0.73 0.177828
Target:  5'- cCAugGCCGCCgACgGGUCGAUccugGaCGGCa -3'
miRNA:   3'- -GUugCGGCGG-UGgCCAGCUG----C-GCCGa -5'
19254 5' -61.6 NC_004684.1 + 38821 0.73 0.173345
Target:  5'- gCAGcCGCCGCaCACCGGU-GGCGgGGUg -3'
miRNA:   3'- -GUU-GCGGCG-GUGGCCAgCUGCgCCGa -5'
19254 5' -61.6 NC_004684.1 + 22192 0.74 0.140984
Target:  5'- -cGCGCUGCCGCUGGa--GCGCGGCg -3'
miRNA:   3'- guUGCGGCGGUGGCCagcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 919 0.77 0.085151
Target:  5'- ---aGCCGCCACCGGguggCGGCGUGGa- -3'
miRNA:   3'- guugCGGCGGUGGCCa---GCUGCGCCga -5'
19254 5' -61.6 NC_004684.1 + 1621 0.73 0.173345
Target:  5'- -uGCGCgCGcCCACCGG-CG-CGCGGCg -3'
miRNA:   3'- guUGCG-GC-GGUGGCCaGCuGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 30041 0.76 0.105495
Target:  5'- gAACGCgCGCuCGCCGGUCGguuGCGGCg -3'
miRNA:   3'- gUUGCG-GCG-GUGGCCAGCug-CGCCGa -5'
19254 5' -61.6 NC_004684.1 + 4011 0.74 0.137351
Target:  5'- -uACGCCGCCAUCGGcUGGCGCgucGGCc -3'
miRNA:   3'- guUGCGGCGGUGGCCaGCUGCG---CCGa -5'
19254 5' -61.6 NC_004684.1 + 5902 0.73 0.177828
Target:  5'- gAGCGCCGCCGCCu----GCGCGGCg -3'
miRNA:   3'- gUUGCGGCGGUGGccagcUGCGCCGa -5'
19254 5' -61.6 NC_004684.1 + 12202 0.72 0.189008
Target:  5'- cCAGCGCCGCCGCCagcggugcguucuccGGgggugcuucCGGCaGCGGCUc -3'
miRNA:   3'- -GUUGCGGCGGUGG---------------CCa--------GCUG-CGCCGA- -5'
19254 5' -61.6 NC_004684.1 + 9969 0.75 0.114243
Target:  5'- cUAACGCCGCCggcacACCGGUCGAgugauaCGCuGGCc -3'
miRNA:   3'- -GUUGCGGCGG-----UGGCCAGCU------GCG-CCGa -5'
19254 5' -61.6 NC_004684.1 + 30622 0.75 0.123665
Target:  5'- cCAGCGUCGgCACCGGgcgCGGCccugGCGGCg -3'
miRNA:   3'- -GUUGCGGCgGUGGCCa--GCUG----CGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.