miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 3' -55.9 NC_004684.1 + 39298 0.85 0.060705
Target:  5'- cGCACCACccGGUGCGGGuCGCgCGGCGGc -3'
miRNA:   3'- aCGUGGUG--UUAUGCCCuGUG-GCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 47234 0.72 0.42789
Target:  5'- -aCGCCGCAAgggcCGGGccguCACCGGCGa -3'
miRNA:   3'- acGUGGUGUUau--GCCCu---GUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 52218 0.71 0.456376
Target:  5'- aGCACCAgucccaGGUGCGuGGCGgCGGCGGc -3'
miRNA:   3'- aCGUGGUg-----UUAUGCcCUGUgGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 53738 0.66 0.778129
Target:  5'- gUGCGCCACGAgacaccacGCaGG-UGCgCGGCGGc -3'
miRNA:   3'- -ACGUGGUGUUa-------UGcCCuGUG-GCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 43199 0.76 0.236682
Target:  5'- gGCACCGCAGgcaccggcauuuuggGCGGcGGCACCGccuGCGGa -3'
miRNA:   3'- aCGUGGUGUUa--------------UGCC-CUGUGGC---CGCC- -5'
19256 3' -55.9 NC_004684.1 + 57085 0.76 0.252755
Target:  5'- gGCGCgCACAucgGUGCGGGcgaccucuggcgcgACACCGGCGu -3'
miRNA:   3'- aCGUG-GUGU---UAUGCCC--------------UGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 41062 0.75 0.281294
Target:  5'- cGCACCGCGucggcaauCGGcGGC-CCGGCGGc -3'
miRNA:   3'- aCGUGGUGUuau-----GCC-CUGuGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 57523 0.74 0.301949
Target:  5'- cUGCGCgGCGu--CGGGAuccggcggcagcuCACCGGCGGc -3'
miRNA:   3'- -ACGUGgUGUuauGCCCU-------------GUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 25165 0.73 0.365729
Target:  5'- cGCGCCG--GUGCc-GACACCGGCGGc -3'
miRNA:   3'- aCGUGGUguUAUGccCUGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 9018 0.72 0.41863
Target:  5'- cGCGgUGCcGUGCGGGGCggcaACCGGCGcGg -3'
miRNA:   3'- aCGUgGUGuUAUGCCCUG----UGGCCGC-C- -5'
19256 3' -55.9 NC_004684.1 + 9455 0.72 0.382843
Target:  5'- aGCACCGCAGgcgguCGGcaauguCAUCGGCGGu -3'
miRNA:   3'- aCGUGGUGUUau---GCCcu----GUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 29824 0.74 0.333113
Target:  5'- gGCACCuccagcuccCGGUAcacCGGGucCACCGGCGGg -3'
miRNA:   3'- aCGUGGu--------GUUAU---GCCCu-GUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 47540 0.8 0.125155
Target:  5'- cUGCACCACGGUGCGcGGCaACCGGCa- -3'
miRNA:   3'- -ACGUGGUGUUAUGCcCUG-UGGCCGcc -5'
19256 3' -55.9 NC_004684.1 + 9535 0.72 0.409493
Target:  5'- cGUGCCgggacgcugGCAAUcggGCGGG-UACCGGCGGc -3'
miRNA:   3'- aCGUGG---------UGUUA---UGCCCuGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 54431 0.79 0.163894
Target:  5'- cUGcCGCCGCGucgGCGGGAgCACCGGgGGu -3'
miRNA:   3'- -AC-GUGGUGUua-UGCCCU-GUGGCCgCC- -5'
19256 3' -55.9 NC_004684.1 + 8802 0.74 0.310084
Target:  5'- aGCACCGCGcauGUACGaGGcGCugCGGCGc -3'
miRNA:   3'- aCGUGGUGU---UAUGC-CC-UGugGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 44829 0.72 0.409493
Target:  5'- cGUACCGacCGAUGUGGcGAUACCGGCGa -3'
miRNA:   3'- aCGUGGU--GUUAUGCC-CUGUGGCCGCc -5'
19256 3' -55.9 NC_004684.1 + 50517 0.71 0.446766
Target:  5'- cUGCACCACAccgGCGcaGACACUGGCc- -3'
miRNA:   3'- -ACGUGGUGUua-UGCc-CUGUGGCCGcc -5'
19256 3' -55.9 NC_004684.1 + 40947 0.78 0.168313
Target:  5'- cGUGCCGCcGUAcacCGGGcCACCGGCGGc -3'
miRNA:   3'- aCGUGGUGuUAU---GCCCuGUGGCCGCC- -5'
19256 3' -55.9 NC_004684.1 + 25931 0.75 0.281294
Target:  5'- aGCACCGC----CGGGgucagcccacugACACCGGCGGc -3'
miRNA:   3'- aCGUGGUGuuauGCCC------------UGUGGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.