miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19256 5' -63.1 NC_004684.1 + 14487 0.66 0.38778
Target:  5'- aCGCCGCC-GUGCUgGCcgGacgcuccugggugcaUGCCACCg- -3'
miRNA:   3'- -GCGGCGGcCACGAgCG--C---------------ACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 62736 0.66 0.384397
Target:  5'- uCGUCGUgGGUGCUgGgaCGUGCCAUg-- -3'
miRNA:   3'- -GCGGCGgCCACGAgC--GCACGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 9665 0.66 0.384397
Target:  5'- uGCCGCCuGg----GCGUGCCACCa- -3'
miRNA:   3'- gCGGCGGcCacgagCGCACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 62490 0.66 0.384397
Target:  5'- uGCCGCCGaGgccGgUgGCGaccagGCCGCCUGa -3'
miRNA:   3'- gCGGCGGC-Ca--CgAgCGCa----CGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 16266 0.66 0.384397
Target:  5'- -uUCGUCGGcagaUGCUCGCG-GCCauGCCUGc -3'
miRNA:   3'- gcGGCGGCC----ACGAGCGCaCGG--UGGAU- -5'
19256 5' -63.1 NC_004684.1 + 23212 0.66 0.381872
Target:  5'- gGCCGCCGGUGgcgacggcggguucCUgaaauggcucCGCGacGCCACCa- -3'
miRNA:   3'- gCGGCGGCCAC--------------GA----------GCGCa-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 49061 0.66 0.375194
Target:  5'- gGCUcgGCCaGGUGCUCGUcgcccacGUcGCCGCCa- -3'
miRNA:   3'- gCGG--CGG-CCACGAGCG-------CA-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 65432 0.66 0.367776
Target:  5'- gCGCugCGCUGGcgUGCggCGCGcgGCCACCg- -3'
miRNA:   3'- -GCG--GCGGCC--ACGa-GCGCa-CGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 18328 0.66 0.367776
Target:  5'- cCGCaCGCCGGUGC-CGCccccggaGCCgACCg- -3'
miRNA:   3'- -GCG-GCGGCCACGaGCGca-----CGG-UGGau -5'
19256 5' -63.1 NC_004684.1 + 8015 0.66 0.366959
Target:  5'- uGCCGCCGGgcgGUUCcaggacaccgugcGCGUGUucaaCACCa- -3'
miRNA:   3'- gCGGCGGCCa--CGAG-------------CGCACG----GUGGau -5'
19256 5' -63.1 NC_004684.1 + 42327 0.66 0.36046
Target:  5'- aCGuuGCCGGUGCgCGCGaacuucuggagcugcGCCACg-- -3'
miRNA:   3'- -GCggCGGCCACGaGCGCa--------------CGGUGgau -5'
19256 5' -63.1 NC_004684.1 + 13934 0.66 0.359653
Target:  5'- cCGuuGCCGGUGCugacacUCGCGggggGCCcUCg- -3'
miRNA:   3'- -GCggCGGCCACG------AGCGCa---CGGuGGau -5'
19256 5' -63.1 NC_004684.1 + 46606 0.66 0.359653
Target:  5'- uGCgUGCCGGUgGCuUCGgG-GCCACCg- -3'
miRNA:   3'- gCG-GCGGCCA-CG-AGCgCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 39943 0.66 0.359653
Target:  5'- -aCCGCCGGUGgUggcacCGCGcuccaaUGCCGCCa- -3'
miRNA:   3'- gcGGCGGCCACgA-----GCGC------ACGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 22007 0.66 0.359653
Target:  5'- gGCCaugggGCCGGUGCUCGC---CgACCUGa -3'
miRNA:   3'- gCGG-----CGGCCACGAGCGcacGgUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 9972 0.66 0.358848
Target:  5'- aCGCCGCCGGcacaccggucgagUGauaCGCuG-GCCGCCUGg -3'
miRNA:   3'- -GCGGCGGCC-------------ACga-GCG-CaCGGUGGAU- -5'
19256 5' -63.1 NC_004684.1 + 8132 0.66 0.358044
Target:  5'- aCGaCCGCguCGGUGCUCGgGUGCagcagaucgucaACCa- -3'
miRNA:   3'- -GC-GGCG--GCCACGAGCgCACGg-----------UGGau -5'
19256 5' -63.1 NC_004684.1 + 2449 0.66 0.351656
Target:  5'- uCGcCCGCCuGGgcggccaGCUCgGCGUGCCguaccACCUGa -3'
miRNA:   3'- -GC-GGCGG-CCa------CGAG-CGCACGG-----UGGAU- -5'
19256 5' -63.1 NC_004684.1 + 2352 0.66 0.351656
Target:  5'- uGCCGCCcugaGUUCGUG-GCCGCCa- -3'
miRNA:   3'- gCGGCGGcca-CGAGCGCaCGGUGGau -5'
19256 5' -63.1 NC_004684.1 + 25439 0.66 0.351656
Target:  5'- uGCCGCUGGccugucggacUGCUcCG-GUGCCAUCa- -3'
miRNA:   3'- gCGGCGGCC----------ACGA-GCgCACGGUGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.