miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19258 3' -63.2 NC_004684.1 + 67084 0.72 0.134161
Target:  5'- -gGGCGUUGGCCUCGGC--GGCcaGCg- -3'
miRNA:   3'- ugCCGCAACCGGAGCCGguCCG--CGac -5'
19258 3' -63.2 NC_004684.1 + 67009 0.75 0.083005
Target:  5'- cGCGGggcCGUcGGUCUCGGCCAGGuCGCg- -3'
miRNA:   3'- -UGCC---GCAaCCGGAGCCGGUCC-GCGac -5'
19258 3' -63.2 NC_004684.1 + 66658 0.69 0.218348
Target:  5'- uCGGCGgcGGCC-CGGUCAccGGCGgUGc -3'
miRNA:   3'- uGCCGCaaCCGGaGCCGGU--CCGCgAC- -5'
19258 3' -63.2 NC_004684.1 + 66460 0.66 0.357241
Target:  5'- gGCGGCGUUGucuccacGCCgccacccgguggCGGCUAGGCcUUGg -3'
miRNA:   3'- -UGCCGCAAC-------CGGa-----------GCCGGUCCGcGAC- -5'
19258 3' -63.2 NC_004684.1 + 66014 0.79 0.03962
Target:  5'- gGCGGCcUUGGCgUCGGCCAgGGUGUUGg -3'
miRNA:   3'- -UGCCGcAACCGgAGCCGGU-CCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 65760 0.74 0.092458
Target:  5'- -gGGCGUUGGCCgccgCGcGCCgguGGGCGCg- -3'
miRNA:   3'- ugCCGCAACCGGa---GC-CGG---UCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 65679 0.67 0.306356
Target:  5'- cGCGGCacUGGCCggugcCuGCCAGGUGCa- -3'
miRNA:   3'- -UGCCGcaACCGGa----GcCGGUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 65007 0.69 0.241039
Target:  5'- aGCGGCGUUGGUggugUGGCCauAGGCgaccucgugGCUGa -3'
miRNA:   3'- -UGCCGCAACCGga--GCCGG--UCCG---------CGAC- -5'
19258 3' -63.2 NC_004684.1 + 64229 1.08 0.000265
Target:  5'- cACGGCGUUGGCCUCGGCCAGGCGCUGg -3'
miRNA:   3'- -UGCCGCAACCGGAGCCGGUCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 64043 0.67 0.316513
Target:  5'- gGCGGUGUcGGCCUCGaacaccucguugagcGCCuuGCGCa- -3'
miRNA:   3'- -UGCCGCAaCCGGAGC---------------CGGucCGCGac -5'
19258 3' -63.2 NC_004684.1 + 63896 0.69 0.229457
Target:  5'- uGCGGCGUccuggcGGCCacggugCGGCCcGGCGUg- -3'
miRNA:   3'- -UGCCGCAa-----CCGGa-----GCCGGuCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 63541 0.71 0.165205
Target:  5'- -gGGCG-UGGCgCUCGGCCuccucGGcCGCUGc -3'
miRNA:   3'- ugCCGCaACCG-GAGCCGGu----CC-GCGAC- -5'
19258 3' -63.2 NC_004684.1 + 63136 0.67 0.304213
Target:  5'- gAUGGUGguggUGGCCgagugCGGCuccugcgcgccgcgCAGGCGCa- -3'
miRNA:   3'- -UGCCGCa---ACCGGa----GCCG--------------GUCCGCGac -5'
19258 3' -63.2 NC_004684.1 + 62270 0.7 0.192577
Target:  5'- uGCGGU---GGCCUUcagcaGGuCCAGGCGCUGc -3'
miRNA:   3'- -UGCCGcaaCCGGAG-----CC-GGUCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 61500 0.66 0.350863
Target:  5'- -aGGCGgcGGCgCUCGaugcgcGCCagcagugacgugcAGGCGCUGg -3'
miRNA:   3'- ugCCGCaaCCG-GAGC------CGG-------------UCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 61338 0.72 0.145118
Target:  5'- gGCGGCGUaGGUggCGGCCAGGUGa-- -3'
miRNA:   3'- -UGCCGCAaCCGgaGCCGGUCCGCgac -5'
19258 3' -63.2 NC_004684.1 + 61338 0.75 0.078631
Target:  5'- cGCGGCGUgguUGGUcagCUgGGCCgcgAGGCGCUGg -3'
miRNA:   3'- -UGCCGCA---ACCG---GAgCCGG---UCCGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 60923 0.74 0.092458
Target:  5'- cACGGCGUcgcacGCCUCGGCCAGuucgacaugcGUGCUGu -3'
miRNA:   3'- -UGCCGCAac---CGGAGCCGGUC----------CGCGAC- -5'
19258 3' -63.2 NC_004684.1 + 60303 0.66 0.351656
Target:  5'- uCGGCGgccuccagGGCCUCGGCaauGCGUUc -3'
miRNA:   3'- uGCCGCaa------CCGGAGCCGgucCGCGAc -5'
19258 3' -63.2 NC_004684.1 + 60213 0.83 0.019758
Target:  5'- uCGGCGUUGGCCUCGGCguugUAGGUGCa- -3'
miRNA:   3'- uGCCGCAACCGGAGCCG----GUCCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.