miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19259 5' -56.4 NC_004684.1 + 64596 0.65 0.750416
Target:  5'- uGGCCUCGgcgaacucgaacucgCUGGcguccaGGCUGgaCACCu -3'
miRNA:   3'- -CCGGAGCaa-------------GACCuug---CCGACg-GUGG- -5'
19259 5' -56.4 NC_004684.1 + 41566 0.65 0.749407
Target:  5'- uGGCCgccgaugcCGUUCUGGccgccacccggccAGuuggugacgaacacCGGCgUGCCGCCg -3'
miRNA:   3'- -CCGGa-------GCAAGACC-------------UU--------------GCCG-ACGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 18027 0.66 0.747385
Target:  5'- uGGCgUUGgaggUCUGGAccgGCGGCgaaggcgaggacgacUGCCcgguGCCg -3'
miRNA:   3'- -CCGgAGCa---AGACCU---UGCCG---------------ACGG----UGG- -5'
19259 5' -56.4 NC_004684.1 + 2606 0.66 0.743329
Target:  5'- cGCCgacgcggaGUUCUGGAAgcaGGCgGUgGCCa -3'
miRNA:   3'- cCGGag------CAAGACCUUg--CCGaCGgUGG- -5'
19259 5' -56.4 NC_004684.1 + 24513 0.66 0.743329
Target:  5'- gGGCCgcgCGUUCggcGGugccaucuACGGCggugUGCCggGCCg -3'
miRNA:   3'- -CCGGa--GCAAGa--CCu-------UGCCG----ACGG--UGG- -5'
19259 5' -56.4 NC_004684.1 + 57821 0.66 0.743329
Target:  5'- cGGCCUgGUcCcGG--CGGUgcugGCCGCCg -3'
miRNA:   3'- -CCGGAgCAaGaCCuuGCCGa---CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 26770 0.66 0.740276
Target:  5'- cGGCCgcgcggCGgugaucaacguggugCUGG-ACGuGCUGaCCACCa -3'
miRNA:   3'- -CCGGa-----GCaa-------------GACCuUGC-CGAC-GGUGG- -5'
19259 5' -56.4 NC_004684.1 + 64771 0.66 0.733116
Target:  5'- aGGCgUCGgUCUGGcuguCGGCgaaGCUgACCa -3'
miRNA:   3'- -CCGgAGCaAGACCuu--GCCGa--CGG-UGG- -5'
19259 5' -56.4 NC_004684.1 + 63055 0.66 0.722807
Target:  5'- cGCCUaacggUUGGuGGCGGCuaccgUGCCGCCg -3'
miRNA:   3'- cCGGAgcaa-GACC-UUGCCG-----ACGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 31193 0.66 0.721771
Target:  5'- aGGCCUCGUagagggcCUGGAAgacgaccUGGCcGaCGCCg -3'
miRNA:   3'- -CCGGAGCAa------GACCUU-------GCCGaCgGUGG- -5'
19259 5' -56.4 NC_004684.1 + 15080 0.66 0.712413
Target:  5'- cGGCCUUa-UC-GGcGCGGUgGCCGCCc -3'
miRNA:   3'- -CCGGAGcaAGaCCuUGCCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 42547 0.66 0.712413
Target:  5'- uGCUgacggCGUUC-GGcuuCGGCgugGCCGCCa -3'
miRNA:   3'- cCGGa----GCAAGaCCuu-GCCGa--CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 48936 0.66 0.712413
Target:  5'- cGGCCUCG-UCgccGAACGGCacGUCGgCg -3'
miRNA:   3'- -CCGGAGCaAGac-CUUGCCGa-CGGUgG- -5'
19259 5' -56.4 NC_004684.1 + 39247 0.66 0.712413
Target:  5'- aGGCCguaGUUgaGGccuGCGuGCgugcagGCCACCa -3'
miRNA:   3'- -CCGGag-CAAgaCCu--UGC-CGa-----CGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 7563 0.66 0.701944
Target:  5'- cGGCCcCGgguggcgCUGGuGCGGCUGgUGCg -3'
miRNA:   3'- -CCGGaGCaa-----GACCuUGCCGACgGUGg -5'
19259 5' -56.4 NC_004684.1 + 5015 0.66 0.701944
Target:  5'- uGGaCCU-GUggaUGGcAACGGUgGCCACCa -3'
miRNA:   3'- -CC-GGAgCAag-ACC-UUGCCGaCGGUGG- -5'
19259 5' -56.4 NC_004684.1 + 54128 0.66 0.701944
Target:  5'- cGGCCaccagCGcgCUGGcggucACGGCcugGCCACg -3'
miRNA:   3'- -CCGGa----GCaaGACCu----UGCCGa--CGGUGg -5'
19259 5' -56.4 NC_004684.1 + 52504 0.66 0.701944
Target:  5'- aGGUgUCcagGUUCUGcGGACGGgUGCCGg- -3'
miRNA:   3'- -CCGgAG---CAAGAC-CUUGCCgACGGUgg -5'
19259 5' -56.4 NC_004684.1 + 32938 0.66 0.701944
Target:  5'- uGCCUCGggCaGGAugGGCcGCUcggGCa -3'
miRNA:   3'- cCGGAGCaaGaCCUugCCGaCGG---UGg -5'
19259 5' -56.4 NC_004684.1 + 40335 0.67 0.691411
Target:  5'- cGGaCC-CGgcgCUGGAGaugaGGCuggacacaaUGCCACCg -3'
miRNA:   3'- -CC-GGaGCaa-GACCUUg---CCG---------ACGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.