miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19260 5' -54.2 NC_004684.1 + 59828 0.66 0.859312
Target:  5'- gCCGCAccAGCGCCa--CCCGGG-GCCg -3'
miRNA:   3'- -GGUGUcuUUGCGGcgaGGGUCCuUGG- -5'
19260 5' -54.2 NC_004684.1 + 53819 0.66 0.859312
Target:  5'- uCCAUgcGGGCGUgCGCUUCCAGGcuggagugcAACCa -3'
miRNA:   3'- -GGUGucUUUGCG-GCGAGGGUCC---------UUGG- -5'
19260 5' -54.2 NC_004684.1 + 46730 0.66 0.859312
Target:  5'- gCCACGGcugaucuuGCGCCGgaCCuCuGGggUCa -3'
miRNA:   3'- -GGUGUCuu------UGCGGCgaGG-GuCCuuGG- -5'
19260 5' -54.2 NC_004684.1 + 65751 0.66 0.859312
Target:  5'- cCCACuuGGGCGCCGgUaCCCGGuugcGCCg -3'
miRNA:   3'- -GGUGucUUUGCGGCgA-GGGUCcu--UGG- -5'
19260 5' -54.2 NC_004684.1 + 8430 0.66 0.851081
Target:  5'- cCCGCGcgccCGCCGggCCaGGGAACCu -3'
miRNA:   3'- -GGUGUcuuuGCGGCgaGGgUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 17744 0.66 0.851081
Target:  5'- uCCACGccGugGUCgguGCUCCU-GGAGCCg -3'
miRNA:   3'- -GGUGUcuUugCGG---CGAGGGuCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 47120 0.66 0.851081
Target:  5'- cCgGCAGAGcguGCGCCucgguggcguagGCggccccggugCCCAGGAGCa -3'
miRNA:   3'- -GgUGUCUU---UGCGG------------CGa---------GGGUCCUUGg -5'
19260 5' -54.2 NC_004684.1 + 14405 0.66 0.849408
Target:  5'- gCCGCAgGAGAUGCUGCgcgaacugcuggCCaAGGggUCa -3'
miRNA:   3'- -GGUGU-CUUUGCGGCGa-----------GGgUCCuuGG- -5'
19260 5' -54.2 NC_004684.1 + 54573 0.66 0.842627
Target:  5'- -aGCAGAGcCGCCGUcCUCGGGcGCg -3'
miRNA:   3'- ggUGUCUUuGCGGCGaGGGUCCuUGg -5'
19260 5' -54.2 NC_004684.1 + 64995 0.66 0.842627
Target:  5'- gCCACGacgugcACGCCGCaCCCGGcGAaggugGCCa -3'
miRNA:   3'- -GGUGUcuu---UGCGGCGaGGGUC-CU-----UGG- -5'
19260 5' -54.2 NC_004684.1 + 54628 0.66 0.842627
Target:  5'- gCCGCAGgcGCaGCCGCgcgggCCaagaGGGcgucGACCu -3'
miRNA:   3'- -GGUGUCuuUG-CGGCGa----GGg---UCC----UUGG- -5'
19260 5' -54.2 NC_004684.1 + 11173 0.66 0.842627
Target:  5'- aCCGCcugcauGCGCCGCUCCCAc-AGCg -3'
miRNA:   3'- -GGUGucuu--UGCGGCGAGGGUccUUGg -5'
19260 5' -54.2 NC_004684.1 + 39569 0.66 0.842627
Target:  5'- cCCAgCAGGAGuCGCCca--CCAGGAGCa -3'
miRNA:   3'- -GGU-GUCUUU-GCGGcgagGGUCCUUGg -5'
19260 5' -54.2 NC_004684.1 + 19237 0.66 0.842627
Target:  5'- aCugGGAGccGCGCaaCGCUCCCAucaucaccGGGCCg -3'
miRNA:   3'- gGugUCUU--UGCG--GCGAGGGUc-------CUUGG- -5'
19260 5' -54.2 NC_004684.1 + 7879 0.66 0.842627
Target:  5'- gCGCAGGccuacGACGCgcccggUGCUCCguuGGGGCCg -3'
miRNA:   3'- gGUGUCU-----UUGCG------GCGAGGgu-CCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 33908 0.66 0.842627
Target:  5'- gCGCGGAcagauaugGGCGCgCGCaUCCAGuGACCg -3'
miRNA:   3'- gGUGUCU--------UUGCG-GCGaGGGUCcUUGG- -5'
19260 5' -54.2 NC_004684.1 + 41878 0.66 0.842627
Target:  5'- uCgGCGGucgaGAACaGCCGCUCgCCGGucGCCu -3'
miRNA:   3'- -GgUGUC----UUUG-CGGCGAG-GGUCcuUGG- -5'
19260 5' -54.2 NC_004684.1 + 58722 0.66 0.83396
Target:  5'- gCCACcuGGAACaGCaGCUCCU-GGAGCUg -3'
miRNA:   3'- -GGUGu-CUUUG-CGgCGAGGGuCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 64407 0.66 0.83396
Target:  5'- aCGaAGguGCGCCGCccgccgUCCAGGGcACCg -3'
miRNA:   3'- gGUgUCuuUGCGGCGa-----GGGUCCU-UGG- -5'
19260 5' -54.2 NC_004684.1 + 65571 0.66 0.83396
Target:  5'- aCCGCAGGucaGCCGCcauggCCuCGGucauGAGCCg -3'
miRNA:   3'- -GGUGUCUuugCGGCGa----GG-GUC----CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.