miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19260 5' -54.2 NC_004684.1 + 65751 0.66 0.859312
Target:  5'- cCCACuuGGGCGCCGgUaCCCGGuugcGCCg -3'
miRNA:   3'- -GGUGucUUUGCGGCgA-GGGUCcu--UGG- -5'
19260 5' -54.2 NC_004684.1 + 65716 0.66 0.83396
Target:  5'- gCC-CGGguGCGUCGgUUCCAGGGAg- -3'
miRNA:   3'- -GGuGUCuuUGCGGCgAGGGUCCUUgg -5'
19260 5' -54.2 NC_004684.1 + 65571 0.66 0.83396
Target:  5'- aCCGCAGGucaGCCGCcauggCCuCGGucauGAGCCg -3'
miRNA:   3'- -GGUGUCUuugCGGCGa----GG-GUC----CUUGG- -5'
19260 5' -54.2 NC_004684.1 + 65344 0.7 0.641794
Target:  5'- gCCACG--AugGCgGCcCCCAGGGccACCa -3'
miRNA:   3'- -GGUGUcuUugCGgCGaGGGUCCU--UGG- -5'
19260 5' -54.2 NC_004684.1 + 65249 1.13 0.00102
Target:  5'- gCCACAGAAACGCCGCUCCCAGGAACCc -3'
miRNA:   3'- -GGUGUCUUUGCGGCGAGGGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 65025 0.67 0.786763
Target:  5'- gCCAUAGGcgaccucGugGCUGaggucgUCCCAGGAgaugACCg -3'
miRNA:   3'- -GGUGUCU-------UugCGGCg-----AGGGUCCU----UGG- -5'
19260 5' -54.2 NC_004684.1 + 64995 0.66 0.842627
Target:  5'- gCCACGacgugcACGCCGCaCCCGGcGAaggugGCCa -3'
miRNA:   3'- -GGUGUcuu---UGCGGCGaGGGUC-CU-----UGG- -5'
19260 5' -54.2 NC_004684.1 + 64523 0.66 0.825088
Target:  5'- aCCAgCAGGucgucCGgCGCgaCCAGGAACCc -3'
miRNA:   3'- -GGU-GUCUuu---GCgGCGagGGUCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 64407 0.66 0.83396
Target:  5'- aCGaAGguGCGCCGCccgccgUCCAGGGcACCg -3'
miRNA:   3'- gGUgUCuuUGCGGCGa-----GGGUCCU-UGG- -5'
19260 5' -54.2 NC_004684.1 + 63248 0.72 0.524218
Target:  5'- uCCACGGuguccGCGCCgaugcGCUCCUggaccuGGAGCCg -3'
miRNA:   3'- -GGUGUCuu---UGCGG-----CGAGGGu-----CCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 62600 0.68 0.747875
Target:  5'- gCGcCGGucauGGCGUCGCgcaCCCcGGAGCCg -3'
miRNA:   3'- gGU-GUCu---UUGCGGCGa--GGGuCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 62026 0.76 0.306924
Target:  5'- uCCGguGAGACGCCGgUCCUc-GAACCa -3'
miRNA:   3'- -GGUguCUUUGCGGCgAGGGucCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 61690 0.68 0.737599
Target:  5'- gCGCgaGGgcGCGCUGCUCCaccggcguCAGGAuGCCa -3'
miRNA:   3'- gGUG--UCuuUGCGGCGAGG--------GUCCU-UGG- -5'
19260 5' -54.2 NC_004684.1 + 61115 0.66 0.828661
Target:  5'- gCUACAGuu-CGCCGCgcucgugcauccggCCCAGcGACUg -3'
miRNA:   3'- -GGUGUCuuuGCGGCGa-------------GGGUCcUUGG- -5'
19260 5' -54.2 NC_004684.1 + 60525 0.72 0.483318
Target:  5'- aCCGCAGGcugaucuCGCCGCgCCCGGu-GCCg -3'
miRNA:   3'- -GGUGUCUuu-----GCGGCGaGGGUCcuUGG- -5'
19260 5' -54.2 NC_004684.1 + 60242 0.71 0.587783
Target:  5'- cCCGCAGGcgGugGCCacCUUCCGGGuguACCu -3'
miRNA:   3'- -GGUGUCU--UugCGGc-GAGGGUCCu--UGG- -5'
19260 5' -54.2 NC_004684.1 + 59828 0.66 0.859312
Target:  5'- gCCGCAccAGCGCCa--CCCGGG-GCCg -3'
miRNA:   3'- -GGUGUcuUUGCGGcgaGGGUCCuUGG- -5'
19260 5' -54.2 NC_004684.1 + 59240 0.68 0.737599
Target:  5'- cCCGCAGAccCGCaCGCUCCaacu-GCCg -3'
miRNA:   3'- -GGUGUCUuuGCG-GCGAGGguccuUGG- -5'
19260 5' -54.2 NC_004684.1 + 58722 0.66 0.83396
Target:  5'- gCCACcuGGAACaGCaGCUCCU-GGAGCUg -3'
miRNA:   3'- -GGUGu-CUUUG-CGgCGAGGGuCCUUGG- -5'
19260 5' -54.2 NC_004684.1 + 57505 0.67 0.768074
Target:  5'- aCGCAGGugccuGCGCCGgaUCCCgAGGcgguGGCCc -3'
miRNA:   3'- gGUGUCUu----UGCGGCg-AGGG-UCC----UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.