miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19261 5' -57.6 NC_004684.1 + 33649 0.66 0.661404
Target:  5'- uCGGgggcGUCCUGGCCGcGCugCGuCGAg -3'
miRNA:   3'- cGCCac--UAGGACUGGC-CGugGU-GCUa -5'
19261 5' -57.6 NC_004684.1 + 26964 0.66 0.650726
Target:  5'- gGCGGUGGccaacgccgccaUCCaGGCCGGUGCgagCGCGGc -3'
miRNA:   3'- -CGCCACU------------AGGaCUGGCCGUG---GUGCUa -5'
19261 5' -57.6 NC_004684.1 + 14483 0.66 0.650726
Target:  5'- -aGGUGGUU---GCCGGUACCACGc- -3'
miRNA:   3'- cgCCACUAGgacUGGCCGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 48022 0.66 0.650726
Target:  5'- aGCGGUG-UCCUcGGCCauguuGCGCCGCu-- -3'
miRNA:   3'- -CGCCACuAGGA-CUGGc----CGUGGUGcua -5'
19261 5' -57.6 NC_004684.1 + 56429 0.66 0.650726
Target:  5'- uCGG-GGUCCaaggaGGCCGcCACCACGAUc -3'
miRNA:   3'- cGCCaCUAGGa----CUGGCcGUGGUGCUA- -5'
19261 5' -57.6 NC_004684.1 + 67216 0.66 0.650726
Target:  5'- gGUGGUGGUCCcGAccaacCCGGuCACCGguuCGAc -3'
miRNA:   3'- -CGCCACUAGGaCU-----GGCC-GUGGU---GCUa -5'
19261 5' -57.6 NC_004684.1 + 40384 0.66 0.640032
Target:  5'- gGCGGUGGcggCCUucggcaGGCCGGUcaGCCACu-- -3'
miRNA:   3'- -CGCCACUa--GGA------CUGGCCG--UGGUGcua -5'
19261 5' -57.6 NC_004684.1 + 41586 0.66 0.640032
Target:  5'- gGCGGcGGcauuUCCUGGCgcaGGUcgGCCACGAg -3'
miRNA:   3'- -CGCCaCU----AGGACUGg--CCG--UGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 45893 0.66 0.629331
Target:  5'- cCGGUGccuuGUCCucugcuUGACCGGCGCguUGAa -3'
miRNA:   3'- cGCCAC----UAGG------ACUGGCCGUGguGCUa -5'
19261 5' -57.6 NC_004684.1 + 38813 0.66 0.62933
Target:  5'- gGCGGUGcccgCCUGG-CGGUGCC-CGAc -3'
miRNA:   3'- -CGCCACua--GGACUgGCCGUGGuGCUa -5'
19261 5' -57.6 NC_004684.1 + 35716 0.66 0.62933
Target:  5'- aCGGUGA-CCUGACCuGGUucaacaacACCAgCGAc -3'
miRNA:   3'- cGCCACUaGGACUGG-CCG--------UGGU-GCUa -5'
19261 5' -57.6 NC_004684.1 + 21319 0.66 0.62933
Target:  5'- gGCGGUGGUCCggcgcGACCGccGCAUC-CGu- -3'
miRNA:   3'- -CGCCACUAGGa----CUGGC--CGUGGuGCua -5'
19261 5' -57.6 NC_004684.1 + 19009 0.66 0.618632
Target:  5'- cCGG-GGUgCUGAUCGuGCACCACa-- -3'
miRNA:   3'- cGCCaCUAgGACUGGC-CGUGGUGcua -5'
19261 5' -57.6 NC_004684.1 + 14524 0.66 0.618631
Target:  5'- aCGGUGAcCCUGGCCuaacuGGCcgaccGCUACGGa -3'
miRNA:   3'- cGCCACUaGGACUGG-----CCG-----UGGUGCUa -5'
19261 5' -57.6 NC_004684.1 + 20934 0.67 0.607944
Target:  5'- cGUGGUGGcCCUGGCC--CACCGCGc- -3'
miRNA:   3'- -CGCCACUaGGACUGGccGUGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 5904 0.67 0.607944
Target:  5'- gGCGGcgcUGAUCgCgcacGACCGGCugGCCGCGc- -3'
miRNA:   3'- -CGCC---ACUAG-Ga---CUGGCCG--UGGUGCua -5'
19261 5' -57.6 NC_004684.1 + 7929 0.67 0.597276
Target:  5'- gGUGGUGGacaucgCCgccGACCGGCGCaCACcGGUg -3'
miRNA:   3'- -CGCCACUa-----GGa--CUGGCCGUG-GUG-CUA- -5'
19261 5' -57.6 NC_004684.1 + 20232 0.67 0.586636
Target:  5'- -gGGUGcgCCUGgcgcGCCGGUACUACu-- -3'
miRNA:   3'- cgCCACuaGGAC----UGGCCGUGGUGcua -5'
19261 5' -57.6 NC_004684.1 + 46698 0.67 0.586636
Target:  5'- uGCGGUGGcgcgcCCUGugCGagcGCGCCAcCGAc -3'
miRNA:   3'- -CGCCACUa----GGACugGC---CGUGGU-GCUa -5'
19261 5' -57.6 NC_004684.1 + 7552 0.67 0.586636
Target:  5'- gGCGGcguucUGGUUCgccuacACCGGCACCGCGc- -3'
miRNA:   3'- -CGCC-----ACUAGGac----UGGCCGUGGUGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.