miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19263 5' -62.8 NC_004685.1 + 52225 0.66 0.428732
Target:  5'- cUCgGCGUCGGCGGGCUUgC-GCGCCa -3'
miRNA:   3'- -AGgUGCGGUUGUCCGGGgGcCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 12429 0.66 0.428732
Target:  5'- gCCAuCGCCGAgaAGGCggcagCCCuGCGCCCc -3'
miRNA:   3'- aGGU-GCGGUUg-UCCGg----GGGcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 60430 0.66 0.428732
Target:  5'- aUCACGCgGGguuuCGGcGgCCCCGGCgcugGCCCa -3'
miRNA:   3'- aGGUGCGgUU----GUC-CgGGGGCCG----UGGG- -5'
19263 5' -62.8 NC_004685.1 + 41556 0.66 0.428732
Target:  5'- aUCGCGUCGAC-GGCUgCggugGGCGCCCc -3'
miRNA:   3'- aGGUGCGGUUGuCCGGgGg---CCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 46423 0.66 0.428732
Target:  5'- uUCUACGC--AguGGCCCC-GGUGCUCg -3'
miRNA:   3'- -AGGUGCGguUguCCGGGGgCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 2084 0.66 0.428732
Target:  5'- gUCGCGCUGAuCGGGUCCCauuCGGC-CCa -3'
miRNA:   3'- aGGUGCGGUU-GUCCGGGG---GCCGuGGg -5'
19263 5' -62.8 NC_004685.1 + 32288 0.66 0.427839
Target:  5'- gUCCugGUggcgcggcgaccgCAGC-GGCCCUgcagauCGGCAUCCa -3'
miRNA:   3'- -AGGugCG-------------GUUGuCCGGGG------GCCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 34365 0.66 0.419844
Target:  5'- aUCC-CGCCGAa--GCCUgCGGCuggACCCg -3'
miRNA:   3'- -AGGuGCGGUUgucCGGGgGCCG---UGGG- -5'
19263 5' -62.8 NC_004685.1 + 34979 0.66 0.419844
Target:  5'- cCCACGCCAucuacaucgGCGGGCUgU--GCACCUg -3'
miRNA:   3'- aGGUGCGGU---------UGUCCGGgGgcCGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 55933 0.66 0.411067
Target:  5'- -gUACGCCAGCA-GCagCCCGGCGaugCCg -3'
miRNA:   3'- agGUGCGGUUGUcCGg-GGGCCGUg--GG- -5'
19263 5' -62.8 NC_004685.1 + 37009 0.66 0.411067
Target:  5'- gUCCugGCU----GGCCCCgCGGUugUCc -3'
miRNA:   3'- -AGGugCGGuuguCCGGGG-GCCGugGG- -5'
19263 5' -62.8 NC_004685.1 + 4386 0.66 0.410196
Target:  5'- uUCCGCGCCGcCAGccuuguaGUCgCCGGuCGCCg -3'
miRNA:   3'- -AGGUGCGGUuGUC-------CGGgGGCC-GUGGg -5'
19263 5' -62.8 NC_004685.1 + 38232 0.66 0.402406
Target:  5'- gUCgGCGUCcuC-GG-CCCCGGCACCa -3'
miRNA:   3'- -AGgUGCGGuuGuCCgGGGGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 33412 0.66 0.402406
Target:  5'- gCCGCGCC-GCAGcGCa-CCGGCcuGCUCg -3'
miRNA:   3'- aGGUGCGGuUGUC-CGggGGCCG--UGGG- -5'
19263 5' -62.8 NC_004685.1 + 24490 0.66 0.402406
Target:  5'- gCCGCGgCGuACAGGUCgCCGGCguGCgCg -3'
miRNA:   3'- aGGUGCgGU-UGUCCGGgGGCCG--UGgG- -5'
19263 5' -62.8 NC_004685.1 + 44112 0.66 0.397265
Target:  5'- gCCACaaggaguggGCCGGCGcGGCgcagggcaaaugggaCCCCGGCAaCCUg -3'
miRNA:   3'- aGGUG---------CGGUUGU-CCG---------------GGGGCCGU-GGG- -5'
19263 5' -62.8 NC_004685.1 + 15595 0.66 0.393861
Target:  5'- gCCcCGUCGACuacaaCCCCGGCgACCCu -3'
miRNA:   3'- aGGuGCGGUUGuccg-GGGGCCG-UGGG- -5'
19263 5' -62.8 NC_004685.1 + 52316 0.66 0.393861
Target:  5'- gCCggACGCCGuaguaGCGGGCCaguugCCG-CGCCCg -3'
miRNA:   3'- aGG--UGCGGU-----UGUCCGGg----GGCcGUGGG- -5'
19263 5' -62.8 NC_004685.1 + 31419 0.66 0.393861
Target:  5'- aCCGCguGCCcuACGGuuuGCCgCCCGGUACCg -3'
miRNA:   3'- aGGUG--CGGu-UGUC---CGG-GGGCCGUGGg -5'
19263 5' -62.8 NC_004685.1 + 49662 0.66 0.393861
Target:  5'- aUCCGCcCCGGCGGGUCgCCCGacucGCGCa- -3'
miRNA:   3'- -AGGUGcGGUUGUCCGG-GGGC----CGUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.