miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19265 3' -56 NC_004685.1 + 2573 0.66 0.756617
Target:  5'- --aCUGCGCcgCGCCGA-GC-GUCGCa -3'
miRNA:   3'- acaGACGCGa-GUGGCUuCGgUAGCGg -5'
19265 3' -56 NC_004685.1 + 8624 0.66 0.756617
Target:  5'- cUGUCcaucgGCGa-CAUCGAGGUCAUCcaGCCg -3'
miRNA:   3'- -ACAGa----CGCgaGUGGCUUCGGUAG--CGG- -5'
19265 3' -56 NC_004685.1 + 43054 0.66 0.756617
Target:  5'- cGUCggugcggcgGUGCUCGCCGcGGUCGgcugggCGCa -3'
miRNA:   3'- aCAGa--------CGCGAGUGGCuUCGGUa-----GCGg -5'
19265 3' -56 NC_004685.1 + 31156 0.66 0.756617
Target:  5'- cGUCgcgaCGCUCGCC---GCCG-CGCCg -3'
miRNA:   3'- aCAGac--GCGAGUGGcuuCGGUaGCGG- -5'
19265 3' -56 NC_004685.1 + 58610 0.66 0.756617
Target:  5'- uUG-CUGCGCagugUCGCCGcGGCCAccgacaugcguUCgGCCc -3'
miRNA:   3'- -ACaGACGCG----AGUGGCuUCGGU-----------AG-CGG- -5'
19265 3' -56 NC_004685.1 + 66697 0.66 0.756617
Target:  5'- cUGUg-GCGCaCGCCGAcGCaCcgCGCCa -3'
miRNA:   3'- -ACAgaCGCGaGUGGCUuCG-GuaGCGG- -5'
19265 3' -56 NC_004685.1 + 58191 0.66 0.756617
Target:  5'- --cCUGUGCUCAcCCGGugcGCCAUgcaCGCa -3'
miRNA:   3'- acaGACGCGAGU-GGCUu--CGGUA---GCGg -5'
19265 3' -56 NC_004685.1 + 55052 0.66 0.756617
Target:  5'- ----aGCGgUCGCCGcGGugguuuCCAUCGCCa -3'
miRNA:   3'- acagaCGCgAGUGGCuUC------GGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 34950 0.66 0.755607
Target:  5'- gUGgCUGcCGCUgGCCGcgcAGCCGUucucccaCGCCa -3'
miRNA:   3'- -ACaGAC-GCGAgUGGCu--UCGGUA-------GCGG- -5'
19265 3' -56 NC_004685.1 + 30906 0.66 0.750538
Target:  5'- gGUgUGCGaacCGCCGAccgagacgaacacguAGCCAgcaggUCGCCc -3'
miRNA:   3'- aCAgACGCga-GUGGCU---------------UCGGU-----AGCGG- -5'
19265 3' -56 NC_004685.1 + 55603 0.66 0.746462
Target:  5'- cGUCgacgccugggaUGC-CUCgGCCGAAGCCG-CGCUc -3'
miRNA:   3'- aCAG-----------ACGcGAG-UGGCUUCGGUaGCGG- -5'
19265 3' -56 NC_004685.1 + 53327 0.66 0.746462
Target:  5'- gGUCcuggGCGCUCAUCGAcu---UCGCCu -3'
miRNA:   3'- aCAGa---CGCGAGUGGCUucgguAGCGG- -5'
19265 3' -56 NC_004685.1 + 15530 0.66 0.737227
Target:  5'- gGUCUGCgGCacaaccaucaaggaGCCGAuaGGCCGagGCCg -3'
miRNA:   3'- aCAGACG-CGag------------UGGCU--UCGGUagCGG- -5'
19265 3' -56 NC_004685.1 + 10794 0.66 0.736196
Target:  5'- cGUgCUGUaCUCACaGAAGCCcUCgGCCg -3'
miRNA:   3'- aCA-GACGcGAGUGgCUUCGGuAG-CGG- -5'
19265 3' -56 NC_004685.1 + 65929 0.66 0.736196
Target:  5'- cUGagUGCGCcgacugcaUCGCUGAGGggAUCGCCa -3'
miRNA:   3'- -ACagACGCG--------AGUGGCUUCggUAGCGG- -5'
19265 3' -56 NC_004685.1 + 38434 0.66 0.736196
Target:  5'- -aUCUGCGCggccgCgauGCCGAccaggcccgAGCCGaCGCCc -3'
miRNA:   3'- acAGACGCGa----G---UGGCU---------UCGGUaGCGG- -5'
19265 3' -56 NC_004685.1 + 32351 0.66 0.736196
Target:  5'- -aUCUuCGCgaugaucucggCACCGAGGCCcugCGCCc -3'
miRNA:   3'- acAGAcGCGa----------GUGGCUUCGGua-GCGG- -5'
19265 3' -56 NC_004685.1 + 65987 0.66 0.736196
Target:  5'- -cUCgGCGCgauacacccgCGCCG-AGCCGUCGgCg -3'
miRNA:   3'- acAGaCGCGa---------GUGGCuUCGGUAGCgG- -5'
19265 3' -56 NC_004685.1 + 37697 0.66 0.736196
Target:  5'- gGUCgaccgGCUCGgUGAAgGUCGUCGCCg -3'
miRNA:   3'- aCAGacg--CGAGUgGCUU-CGGUAGCGG- -5'
19265 3' -56 NC_004685.1 + 63194 0.66 0.719565
Target:  5'- cGUgCUGCaGCUCguagccuucgaggucGCCGAuGCUGUCGUCc -3'
miRNA:   3'- aCA-GACG-CGAG---------------UGGCUuCGGUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.