miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19267 3' -60.8 NC_004685.1 + 18130 0.66 0.521611
Target:  5'- uUCAGGGC-----GGugGCACCGaCCGc -3'
miRNA:   3'- -AGUCCCGaagcgCCugCGUGGC-GGCu -5'
19267 3' -60.8 NC_004685.1 + 9227 0.66 0.521611
Target:  5'- -aGGaGGCcagCGCGGauugggccaGCGCcgggGCCGCCGAa -3'
miRNA:   3'- agUC-CCGaa-GCGCC---------UGCG----UGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 54042 0.66 0.521611
Target:  5'- gCGGGGaugcCGCGGGCGaugGCuCGCCGu -3'
miRNA:   3'- aGUCCCgaa-GCGCCUGCg--UG-GCGGCu -5'
19267 3' -60.8 NC_004685.1 + 50415 0.66 0.521611
Target:  5'- cCGGGGagUagGuCGGuGCGCACCGCCa- -3'
miRNA:   3'- aGUCCCg-AagC-GCC-UGCGUGGCGGcu -5'
19267 3' -60.8 NC_004685.1 + 45753 0.66 0.511671
Target:  5'- cCGGGGCggCGCGuGuuCGCugCGCgGu -3'
miRNA:   3'- aGUCCCGaaGCGC-Cu-GCGugGCGgCu -5'
19267 3' -60.8 NC_004685.1 + 62995 0.66 0.511671
Target:  5'- gUCAGGcccacgcggaaGCUgcccggCGUGGGCGCGgUGUCGAc -3'
miRNA:   3'- -AGUCC-----------CGAa-----GCGCCUGCGUgGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 40459 0.66 0.511671
Target:  5'- gCGGGGCUggaCGCcGAaccugGCGCUGCCGc -3'
miRNA:   3'- aGUCCCGAa--GCGcCUg----CGUGGCGGCu -5'
19267 3' -60.8 NC_004685.1 + 8648 0.66 0.508704
Target:  5'- -uGGGGCUaUCGCGGcgacacugagugcgGCacgacgauguGCAUCGCCGGc -3'
miRNA:   3'- agUCCCGA-AGCGCC--------------UG----------CGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 55148 0.66 0.502792
Target:  5'- gUCGGGGCUcaugucgagcaccagCGCGG-CGCG-CGUCGGc -3'
miRNA:   3'- -AGUCCCGAa--------------GCGCCuGCGUgGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 34245 0.66 0.50181
Target:  5'- aCccGGCcacgUCGaccaccuGACGCACCGCCGAg -3'
miRNA:   3'- aGucCCGa---AGCgc-----CUGCGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 37598 0.66 0.50181
Target:  5'- uUCGGGGUgccCGgGGGaaccUGC-CCGCCGGu -3'
miRNA:   3'- -AGUCCCGaa-GCgCCU----GCGuGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 65368 0.66 0.50181
Target:  5'- cCuGcGGC-UCGCGGAgagGC-CCGCCGAg -3'
miRNA:   3'- aGuC-CCGaAGCGCCUg--CGuGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 58462 0.66 0.50181
Target:  5'- cUCGGuGGUgauUUCGCGG-C-CACCGUCGGc -3'
miRNA:   3'- -AGUC-CCG---AAGCGCCuGcGUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 7160 0.66 0.492033
Target:  5'- gCGGGGUggccaUCGCGGugucCGaGCCGUCGGg -3'
miRNA:   3'- aGUCCCGa----AGCGCCu---GCgUGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 67870 0.66 0.492033
Target:  5'- aCAuGGGa-UCGCGG-CGCGCCGgCGu -3'
miRNA:   3'- aGU-CCCgaAGCGCCuGCGUGGCgGCu -5'
19267 3' -60.8 NC_004685.1 + 18176 0.66 0.492033
Target:  5'- cUCAGGGUgUCGUGuACGUGgaGCCGGg -3'
miRNA:   3'- -AGUCCCGaAGCGCcUGCGUggCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 53533 0.66 0.492033
Target:  5'- aUCGaGGCUUUGCGGucguggcuuuCGCugaCGCCGAc -3'
miRNA:   3'- -AGUcCCGAAGCGCCu---------GCGug-GCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 37801 0.66 0.482345
Target:  5'- gUCAaauGGGCUgacuaCGUGG--GCACCGCCGc -3'
miRNA:   3'- -AGU---CCCGAa----GCGCCugCGUGGCGGCu -5'
19267 3' -60.8 NC_004685.1 + 18768 0.66 0.47275
Target:  5'- --cGGGUggcCGUGGcGCGCaucugACCGCCGAg -3'
miRNA:   3'- aguCCCGaa-GCGCC-UGCG-----UGGCGGCU- -5'
19267 3' -60.8 NC_004685.1 + 18056 0.66 0.47275
Target:  5'- gCAGGGCUUcacCGUGGGC-CACCugggcuucggGCCGc -3'
miRNA:   3'- aGUCCCGAA---GCGCCUGcGUGG----------CGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.