miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19268 5' -58.9 NC_004685.1 + 21463 0.66 0.619907
Target:  5'- cGGCCGGuguuCGACacGGGCG-UCGAGACa -3'
miRNA:   3'- -UCGGCUcc--GCUGc-UCCGCuAGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 62950 0.66 0.619907
Target:  5'- cGGCCGAucCGGCGGGGUGA-CGuGAg -3'
miRNA:   3'- -UCGGCUccGCUGCUCCGCUaGCuCUg -5'
19268 5' -58.9 NC_004685.1 + 23238 0.66 0.619907
Target:  5'- aGGCCGcGGCGAagcugGAuGGCcuGAUCGAGcCg -3'
miRNA:   3'- -UCGGCuCCGCUg----CU-CCG--CUAGCUCuG- -5'
19268 5' -58.9 NC_004685.1 + 6683 0.66 0.619907
Target:  5'- aGGCCGGGGCcaagGAgccCGAGGUGggCGGcacccuGACg -3'
miRNA:   3'- -UCGGCUCCG----CU---GCUCCGCuaGCU------CUG- -5'
19268 5' -58.9 NC_004685.1 + 22655 0.66 0.618853
Target:  5'- aAGCCGGacuucucGGCGuuccGCGGGGCcacuGUCGAGGa -3'
miRNA:   3'- -UCGGCU-------CCGC----UGCUCCGc---UAGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 11788 0.66 0.609375
Target:  5'- cGCCGAGGCG-CGGcGCauGGUCGaAGAg -3'
miRNA:   3'- uCGGCUCCGCuGCUcCG--CUAGC-UCUg -5'
19268 5' -58.9 NC_004685.1 + 16562 0.66 0.609375
Target:  5'- gAGCCGA-GCGACGAcGGCGG-CGuG-Cu -3'
miRNA:   3'- -UCGGCUcCGCUGCU-CCGCUaGCuCuG- -5'
19268 5' -58.9 NC_004685.1 + 38332 0.66 0.609375
Target:  5'- uGGCCGAucuGCG-CGAGcUGGUCGAGAa -3'
miRNA:   3'- -UCGGCUc--CGCuGCUCcGCUAGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 4444 0.66 0.609375
Target:  5'- aGGCCGcguucGGGCGccccgGCGAGuGCGucgaUGAGACg -3'
miRNA:   3'- -UCGGC-----UCCGC-----UGCUC-CGCua--GCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 53510 0.66 0.609375
Target:  5'- uGCCGuccuCGugGGGGUGGuacaUCGAGGCu -3'
miRNA:   3'- uCGGCucc-GCugCUCCGCU----AGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 14673 0.66 0.609375
Target:  5'- cGaCCGAGgGUGAcccCGAGGCGGUgccCGAGGa -3'
miRNA:   3'- uC-GGCUC-CGCU---GCUCCGCUA---GCUCUg -5'
19268 5' -58.9 NC_004685.1 + 26607 0.66 0.598862
Target:  5'- aAGUCGGcGGcCGACGuguGGCGcAUCuGGGGCa -3'
miRNA:   3'- -UCGGCU-CC-GCUGCu--CCGC-UAG-CUCUG- -5'
19268 5' -58.9 NC_004685.1 + 12354 0.66 0.588374
Target:  5'- cAGCCGAcGCGGCaGAGG-GAaCGGGAa -3'
miRNA:   3'- -UCGGCUcCGCUG-CUCCgCUaGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 67447 0.66 0.57792
Target:  5'- cGGCCG-GGCGGC-AGGCaGGUCu-GGCa -3'
miRNA:   3'- -UCGGCuCCGCUGcUCCG-CUAGcuCUG- -5'
19268 5' -58.9 NC_004685.1 + 43139 0.66 0.575834
Target:  5'- cAGCgCGAuccuGGCGACGcgcaccgagugcGGCGG-CGAGACg -3'
miRNA:   3'- -UCG-GCU----CCGCUGCu-----------CCGCUaGCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 10104 0.66 0.567507
Target:  5'- cAGUCGAugagcGGCGACGAGaacGCGcUCGAcgGGCa -3'
miRNA:   3'- -UCGGCU-----CCGCUGCUC---CGCuAGCU--CUG- -5'
19268 5' -58.9 NC_004685.1 + 14623 0.67 0.557142
Target:  5'- uGCUGAuGGCGAUGGaaaccaccgcGGCGAccgcugUCGAGAa -3'
miRNA:   3'- uCGGCU-CCGCUGCU----------CCGCU------AGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 10050 0.67 0.557142
Target:  5'- gGGCCGugcguGGUgcccGAgGAGGCGGUcgcCGAGAUu -3'
miRNA:   3'- -UCGGCu----CCG----CUgCUCCGCUA---GCUCUG- -5'
19268 5' -58.9 NC_004685.1 + 8174 0.67 0.546833
Target:  5'- uGCCGccGCGcACGAGGCcGGguUCGAGGa -3'
miRNA:   3'- uCGGCucCGC-UGCUCCG-CU--AGCUCUg -5'
19268 5' -58.9 NC_004685.1 + 42025 0.67 0.546833
Target:  5'- cGCUGAcGGCaACGAGGUGGcgcgCGAGGa -3'
miRNA:   3'- uCGGCU-CCGcUGCUCCGCUa---GCUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.