miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19270 5' -58 NC_004685.1 + 16482 0.66 0.636252
Target:  5'- -aCAuCCUGGUC--AGCCaaGAGCUGGUc -3'
miRNA:   3'- gaGUuGGACCGGcuUCGG--CUCGACCA- -5'
19270 5' -58 NC_004685.1 + 16252 0.66 0.626596
Target:  5'- gCUCAGCgaGaCCGAGGCCGucgaccugauggaccGCUGGa -3'
miRNA:   3'- -GAGUUGgaCcGGCUUCGGCu--------------CGACCa -5'
19270 5' -58 NC_004685.1 + 44331 0.66 0.625523
Target:  5'- -gCAcCCUGGUCGAcgcgguGGCCGcgaucggggagaAGCUGGg -3'
miRNA:   3'- gaGUuGGACCGGCU------UCGGC------------UCGACCa -5'
19270 5' -58 NC_004685.1 + 45954 0.66 0.625523
Target:  5'- -gCGACgCUGGUgGAGcagguGCgCGGGCUGGUg -3'
miRNA:   3'- gaGUUG-GACCGgCUU-----CG-GCUCGACCA- -5'
19270 5' -58 NC_004685.1 + 55268 0.66 0.625523
Target:  5'- cCUCGGCCUcGGCgCGcAGCUGAcGCUGc- -3'
miRNA:   3'- -GAGUUGGA-CCG-GCuUCGGCU-CGACca -5'
19270 5' -58 NC_004685.1 + 46763 0.66 0.614799
Target:  5'- --gGugCUGGCCGucaucGGCCGGGgaUUGGUg -3'
miRNA:   3'- gagUugGACCGGCu----UCGGCUC--GACCA- -5'
19270 5' -58 NC_004685.1 + 40722 0.66 0.614799
Target:  5'- -aCGACCcgaaggGGCCGugggagGGGCCGGGgUGGa -3'
miRNA:   3'- gaGUUGGa-----CCGGC------UUCGGCUCgACCa -5'
19270 5' -58 NC_004685.1 + 54848 0.66 0.614799
Target:  5'- gCUCGGCCUGGUCGAGGU--GGCa--- -3'
miRNA:   3'- -GAGUUGGACCGGCUUCGgcUCGacca -5'
19270 5' -58 NC_004685.1 + 17942 0.66 0.614799
Target:  5'- -cCGAUCUGGCCGGAGuUCGAGUc--- -3'
miRNA:   3'- gaGUUGGACCGGCUUC-GGCUCGacca -5'
19270 5' -58 NC_004685.1 + 52408 0.66 0.614799
Target:  5'- gCUCGaaGCCgUGGCCGAcgacccuccAGCUGAuGCcGGUg -3'
miRNA:   3'- -GAGU--UGG-ACCGGCU---------UCGGCU-CGaCCA- -5'
19270 5' -58 NC_004685.1 + 27187 0.66 0.60409
Target:  5'- gUCAgcACCggcGGCUgccguGAAGCUGAaGCUGGUg -3'
miRNA:   3'- gAGU--UGGa--CCGG-----CUUCGGCU-CGACCA- -5'
19270 5' -58 NC_004685.1 + 2241 0.66 0.593403
Target:  5'- --aGACCUGccuGCCGcccGGCCGGGCUGa- -3'
miRNA:   3'- gagUUGGAC---CGGCu--UCGGCUCGACca -5'
19270 5' -58 NC_004685.1 + 21350 0.66 0.593403
Target:  5'- -gCGACg-GGCCGAuucaGGCCGAcggcaGCUGGa -3'
miRNA:   3'- gaGUUGgaCCGGCU----UCGGCU-----CGACCa -5'
19270 5' -58 NC_004685.1 + 50024 0.66 0.593403
Target:  5'- uUCG--CUGGCCGAAGUcaacguuguCGAGUUGGa -3'
miRNA:   3'- gAGUugGACCGGCUUCG---------GCUCGACCa -5'
19270 5' -58 NC_004685.1 + 15546 0.66 0.592336
Target:  5'- aUCAaggaGCCgauaGGCCGAGGCCGAcccaccgaacuguGCUcGGa -3'
miRNA:   3'- gAGU----UGGa---CCGGCUUCGGCU-------------CGA-CCa -5'
19270 5' -58 NC_004685.1 + 12637 0.66 0.582748
Target:  5'- aUCGACC-GGCUGcucgccGCCGGGCgGGUc -3'
miRNA:   3'- gAGUUGGaCCGGCuu----CGGCUCGaCCA- -5'
19270 5' -58 NC_004685.1 + 14771 0.67 0.572132
Target:  5'- aUCGACCUGGagGccGCUGGGCUGa- -3'
miRNA:   3'- gAGUUGGACCggCuuCGGCUCGACca -5'
19270 5' -58 NC_004685.1 + 16527 0.67 0.572132
Target:  5'- -cCAGCCUgcGGCCGAAGgCGAccGC-GGUg -3'
miRNA:   3'- gaGUUGGA--CCGGCUUCgGCU--CGaCCA- -5'
19270 5' -58 NC_004685.1 + 29505 0.67 0.561562
Target:  5'- cCUCGACCUGacucGCCaGGguucucugcucuGGCCGAGCaUGGc -3'
miRNA:   3'- -GAGUUGGAC----CGG-CU------------UCGGCUCG-ACCa -5'
19270 5' -58 NC_004685.1 + 20361 0.67 0.561562
Target:  5'- gUCGGagcugCUGGCCGcGGCCGAGCa--- -3'
miRNA:   3'- gAGUUg----GACCGGCuUCGGCUCGacca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.