Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19271 | 5' | -51.7 | NC_004685.1 | + | 13774 | 0.66 | 0.911288 |
Target: 5'- uACcGCcCCGAUGgCGUGCUGGCccacaccgucggcggGUUCg -3' miRNA: 3'- -UGuUGuGGUUGCgGUACGACCG---------------UAAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 31802 | 0.66 | 0.908622 |
Target: 5'- cACGACgACCGucuCGCCGacgcgGCUGGCu--- -3' miRNA: 3'- -UGUUG-UGGUu--GCGGUa----CGACCGuaag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 60811 | 0.66 | 0.908622 |
Target: 5'- cCAACGcaggaaguCCAGCGCCuccuuguUGUUGGCGUc- -3' miRNA: 3'- uGUUGU--------GGUUGCGGu------ACGACCGUAag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 45234 | 0.66 | 0.901755 |
Target: 5'- cGCAGCAggaCAagaACGCCAU-CUGGCAg-- -3' miRNA: 3'- -UGUUGUg--GU---UGCGGUAcGACCGUaag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 55318 | 0.66 | 0.901053 |
Target: 5'- uCGACACCAcgggggUGCgGUGCgggcacgacggguUGGCGUUCa -3' miRNA: 3'- uGUUGUGGUu-----GCGgUACG-------------ACCGUAAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 258 | 0.66 | 0.899639 |
Target: 5'- gACGACACCGacucuugcucgucuGCGCCggGUucggGGUcgUCg -3' miRNA: 3'- -UGUUGUGGU--------------UGCGGuaCGa---CCGuaAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 58153 | 0.66 | 0.894604 |
Target: 5'- cGCAGCGCCGACGC-AUGagcGCcgUCu -3' miRNA: 3'- -UGUUGUGGUUGCGgUACgacCGuaAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 10140 | 0.66 | 0.894604 |
Target: 5'- uGCGAC-CCGACGg---GCUGGCAggCa -3' miRNA: 3'- -UGUUGuGGUUGCgguaCGACCGUaaG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 39421 | 0.66 | 0.894604 |
Target: 5'- uCGGCGCC-GCGCCA-GgaGGCAg-- -3' miRNA: 3'- uGUUGUGGuUGCGGUaCgaCCGUaag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 55739 | 0.66 | 0.894604 |
Target: 5'- uCGGCACgauGACGCCGuucuccuugaUGCUGGCGa-- -3' miRNA: 3'- uGUUGUGg--UUGCGGU----------ACGACCGUaag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 67302 | 0.66 | 0.887173 |
Target: 5'- cGCGcCGCCAA-GCuCGUGCUGGCc--- -3' miRNA: 3'- -UGUuGUGGUUgCG-GUACGACCGuaag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 18940 | 0.66 | 0.887173 |
Target: 5'- -gAugGCC-GCGCUGUGCcUGGCGcUCg -3' miRNA: 3'- ugUugUGGuUGCGGUACG-ACCGUaAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 11372 | 0.66 | 0.887173 |
Target: 5'- -gGugACCAcuCGCCGgagGCUGGCGc-- -3' miRNA: 3'- ugUugUGGUu-GCGGUa--CGACCGUaag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 68555 | 0.66 | 0.879466 |
Target: 5'- cCGAUGCgGGCGCCccgAUGCgucggGGUGUUCg -3' miRNA: 3'- uGUUGUGgUUGCGG---UACGa----CCGUAAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 13747 | 0.66 | 0.879466 |
Target: 5'- gACGGCAUCGccGgGCUGcUGCUGGCGUa- -3' miRNA: 3'- -UGUUGUGGU--UgCGGU-ACGACCGUAag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 23739 | 0.66 | 0.879466 |
Target: 5'- uGCucCACCAGCgucGCCGUGUcgGGCAggUCc -3' miRNA: 3'- -UGuuGUGGUUG---CGGUACGa-CCGUa-AG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 12021 | 0.66 | 0.879466 |
Target: 5'- -gGACGCCAACGCCGacgugaaGCUcGCggUCa -3' miRNA: 3'- ugUUGUGGUUGCGGUa------CGAcCGuaAG- -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 9134 | 0.66 | 0.879466 |
Target: 5'- aGCAacuGCAUCAACGCC-UGCUGcaGCGg-- -3' miRNA: 3'- -UGU---UGUGGUUGCGGuACGAC--CGUaag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 53553 | 0.66 | 0.879466 |
Target: 5'- cGCGGCcgacuccaggggACCGugGCCGUGCgcgucGGCGg-- -3' miRNA: 3'- -UGUUG------------UGGUugCGGUACGa----CCGUaag -5' |
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19271 | 5' | -51.7 | NC_004685.1 | + | 42481 | 0.67 | 0.874713 |
Target: 5'- aGCGGCACCAGCuucagcuucacggcaGCCgccgGUGCUGacGUGUUCg -3' miRNA: 3'- -UGUUGUGGUUG---------------CGG----UACGAC--CGUAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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