miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19271 5' -51.7 NC_004685.1 + 13774 0.66 0.911288
Target:  5'- uACcGCcCCGAUGgCGUGCUGGCccacaccgucggcggGUUCg -3'
miRNA:   3'- -UGuUGuGGUUGCgGUACGACCG---------------UAAG- -5'
19271 5' -51.7 NC_004685.1 + 60811 0.66 0.908622
Target:  5'- cCAACGcaggaaguCCAGCGCCuccuuguUGUUGGCGUc- -3'
miRNA:   3'- uGUUGU--------GGUUGCGGu------ACGACCGUAag -5'
19271 5' -51.7 NC_004685.1 + 31802 0.66 0.908622
Target:  5'- cACGACgACCGucuCGCCGacgcgGCUGGCu--- -3'
miRNA:   3'- -UGUUG-UGGUu--GCGGUa----CGACCGuaag -5'
19271 5' -51.7 NC_004685.1 + 45234 0.66 0.901755
Target:  5'- cGCAGCAggaCAagaACGCCAU-CUGGCAg-- -3'
miRNA:   3'- -UGUUGUg--GU---UGCGGUAcGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 55318 0.66 0.901053
Target:  5'- uCGACACCAcgggggUGCgGUGCgggcacgacggguUGGCGUUCa -3'
miRNA:   3'- uGUUGUGGUu-----GCGgUACG-------------ACCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 258 0.66 0.899639
Target:  5'- gACGACACCGacucuugcucgucuGCGCCggGUucggGGUcgUCg -3'
miRNA:   3'- -UGUUGUGGU--------------UGCGGuaCGa---CCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 39421 0.66 0.894604
Target:  5'- uCGGCGCC-GCGCCA-GgaGGCAg-- -3'
miRNA:   3'- uGUUGUGGuUGCGGUaCgaCCGUaag -5'
19271 5' -51.7 NC_004685.1 + 10140 0.66 0.894604
Target:  5'- uGCGAC-CCGACGg---GCUGGCAggCa -3'
miRNA:   3'- -UGUUGuGGUUGCgguaCGACCGUaaG- -5'
19271 5' -51.7 NC_004685.1 + 58153 0.66 0.894604
Target:  5'- cGCAGCGCCGACGC-AUGagcGCcgUCu -3'
miRNA:   3'- -UGUUGUGGUUGCGgUACgacCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 55739 0.66 0.894604
Target:  5'- uCGGCACgauGACGCCGuucuccuugaUGCUGGCGa-- -3'
miRNA:   3'- uGUUGUGg--UUGCGGU----------ACGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 18940 0.66 0.887173
Target:  5'- -gAugGCC-GCGCUGUGCcUGGCGcUCg -3'
miRNA:   3'- ugUugUGGuUGCGGUACG-ACCGUaAG- -5'
19271 5' -51.7 NC_004685.1 + 11372 0.66 0.887173
Target:  5'- -gGugACCAcuCGCCGgagGCUGGCGc-- -3'
miRNA:   3'- ugUugUGGUu-GCGGUa--CGACCGUaag -5'
19271 5' -51.7 NC_004685.1 + 67302 0.66 0.887173
Target:  5'- cGCGcCGCCAA-GCuCGUGCUGGCc--- -3'
miRNA:   3'- -UGUuGUGGUUgCG-GUACGACCGuaag -5'
19271 5' -51.7 NC_004685.1 + 13747 0.66 0.879466
Target:  5'- gACGGCAUCGccGgGCUGcUGCUGGCGUa- -3'
miRNA:   3'- -UGUUGUGGU--UgCGGU-ACGACCGUAag -5'
19271 5' -51.7 NC_004685.1 + 68555 0.66 0.879466
Target:  5'- cCGAUGCgGGCGCCccgAUGCgucggGGUGUUCg -3'
miRNA:   3'- uGUUGUGgUUGCGG---UACGa----CCGUAAG- -5'
19271 5' -51.7 NC_004685.1 + 12021 0.66 0.879466
Target:  5'- -gGACGCCAACGCCGacgugaaGCUcGCggUCa -3'
miRNA:   3'- ugUUGUGGUUGCGGUa------CGAcCGuaAG- -5'
19271 5' -51.7 NC_004685.1 + 9134 0.66 0.879466
Target:  5'- aGCAacuGCAUCAACGCC-UGCUGcaGCGg-- -3'
miRNA:   3'- -UGU---UGUGGUUGCGGuACGAC--CGUaag -5'
19271 5' -51.7 NC_004685.1 + 53553 0.66 0.879466
Target:  5'- cGCGGCcgacuccaggggACCGugGCCGUGCgcgucGGCGg-- -3'
miRNA:   3'- -UGUUG------------UGGUugCGGUACGa----CCGUaag -5'
19271 5' -51.7 NC_004685.1 + 23739 0.66 0.879466
Target:  5'- uGCucCACCAGCgucGCCGUGUcgGGCAggUCc -3'
miRNA:   3'- -UGuuGUGGUUG---CGGUACGa-CCGUa-AG- -5'
19271 5' -51.7 NC_004685.1 + 42481 0.67 0.874713
Target:  5'- aGCGGCACCAGCuucagcuucacggcaGCCgccgGUGCUGacGUGUUCg -3'
miRNA:   3'- -UGUUGUGGUUG---------------CGG----UACGAC--CGUAAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.