miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19272 5' -58.2 NC_004685.1 + 32412 0.66 0.660689
Target:  5'- gGCUgGCGGcUCGaagcuGGCGcaggagaauuggaucACCCGCAUUGCu -3'
miRNA:   3'- -CGA-CGCC-AGCg----CUGC---------------UGGGCGUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 50638 0.66 0.656474
Target:  5'- cUUGCGGUCGgGAUGcUCCGaCGgUGCc -3'
miRNA:   3'- cGACGCCAGCgCUGCuGGGC-GUgAUG- -5'
19272 5' -58.2 NC_004685.1 + 13328 0.66 0.656474
Target:  5'- cGCcGCGGagucUgGCGAUGAgCUGCAgCUGCu -3'
miRNA:   3'- -CGaCGCC----AgCGCUGCUgGGCGU-GAUG- -5'
19272 5' -58.2 NC_004685.1 + 35244 0.66 0.656474
Target:  5'- cGCUGUcaUCGaCGACaucACCCGCGcCUACg -3'
miRNA:   3'- -CGACGccAGC-GCUGc--UGGGCGU-GAUG- -5'
19272 5' -58.2 NC_004685.1 + 58101 0.66 0.656474
Target:  5'- uGC-GCGGcUCGCcGCGACCUGC-CguggACa -3'
miRNA:   3'- -CGaCGCC-AGCGcUGCUGGGCGuGa---UG- -5'
19272 5' -58.2 NC_004685.1 + 35954 0.66 0.656474
Target:  5'- gGCaGCGG-CGgGAUGAUCgGCACcuUGCg -3'
miRNA:   3'- -CGaCGCCaGCgCUGCUGGgCGUG--AUG- -5'
19272 5' -58.2 NC_004685.1 + 19956 0.66 0.645923
Target:  5'- aGCUGCG--CGCGACGA--UGCACUGu -3'
miRNA:   3'- -CGACGCcaGCGCUGCUggGCGUGAUg -5'
19272 5' -58.2 NC_004685.1 + 40659 0.66 0.645923
Target:  5'- aCUGCGa-CGCGGCGA-CCGCACc-- -3'
miRNA:   3'- cGACGCcaGCGCUGCUgGGCGUGaug -5'
19272 5' -58.2 NC_004685.1 + 65277 0.66 0.645923
Target:  5'- aGCUcauccgCGCGGCGACCgGCgACUACa -3'
miRNA:   3'- -CGAcgcca-GCGCUGCUGGgCG-UGAUG- -5'
19272 5' -58.2 NC_004685.1 + 62275 0.66 0.645923
Target:  5'- cGC-GCGG-CGCGcUGGCCUGCGCc-- -3'
miRNA:   3'- -CGaCGCCaGCGCuGCUGGGCGUGaug -5'
19272 5' -58.2 NC_004685.1 + 60137 0.66 0.645923
Target:  5'- aUUGCGGggCGCggccagGACGAUCCGC-CUGa -3'
miRNA:   3'- cGACGCCa-GCG------CUGCUGGGCGuGAUg -5'
19272 5' -58.2 NC_004685.1 + 22412 0.66 0.642755
Target:  5'- cGCUccGCGGccucauucagcuccUUGCGGCaGGCgUCGCACUGCu -3'
miRNA:   3'- -CGA--CGCC--------------AGCGCUG-CUG-GGCGUGAUG- -5'
19272 5' -58.2 NC_004685.1 + 60418 0.66 0.639587
Target:  5'- aGCUGUugacgcaucacgcggGGUUuCGGCGGCCCcgGCGCUGg -3'
miRNA:   3'- -CGACG---------------CCAGcGCUGCUGGG--CGUGAUg -5'
19272 5' -58.2 NC_004685.1 + 33027 0.66 0.635361
Target:  5'- --cGUGGaCGCGcucuACGAUCCGCucgACUGCg -3'
miRNA:   3'- cgaCGCCaGCGC----UGCUGGGCG---UGAUG- -5'
19272 5' -58.2 NC_004685.1 + 6758 0.66 0.635361
Target:  5'- cCUGCGGUgCGCaGCGAgCCgguGCGuCUGCg -3'
miRNA:   3'- cGACGCCA-GCGcUGCUgGG---CGU-GAUG- -5'
19272 5' -58.2 NC_004685.1 + 38747 0.66 0.624795
Target:  5'- cGCUGaGG-CG-GGCGACCUGCuggcCUACg -3'
miRNA:   3'- -CGACgCCaGCgCUGCUGGGCGu---GAUG- -5'
19272 5' -58.2 NC_004685.1 + 4756 0.66 0.618458
Target:  5'- cGCUcGUGGUCgGCG-CGcuggccggauacuguGCCCGCACUucgaGCa -3'
miRNA:   3'- -CGA-CGCCAG-CGCuGC---------------UGGGCGUGA----UG- -5'
19272 5' -58.2 NC_004685.1 + 67879 0.66 0.614236
Target:  5'- --cGCGG-CGCGcCGGCgUCGCGCUGg -3'
miRNA:   3'- cgaCGCCaGCGCuGCUG-GGCGUGAUg -5'
19272 5' -58.2 NC_004685.1 + 61862 0.66 0.614236
Target:  5'- cGCUGCGca-GCGAUGAcacauccaguCCCGCgucaGCUACc -3'
miRNA:   3'- -CGACGCcagCGCUGCU----------GGGCG----UGAUG- -5'
19272 5' -58.2 NC_004685.1 + 28072 0.67 0.603691
Target:  5'- gGCUGaGGUCGC--CGACgCCGaGCUGCa -3'
miRNA:   3'- -CGACgCCAGCGcuGCUG-GGCgUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.