miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19274 3' -61.6 NC_004685.1 + 20070 0.66 0.483596
Target:  5'- cGACcACCuGGCguucgUCGGCCaGCCCGCCUa -3'
miRNA:   3'- -UUGaUGG-CUG-----AGCUGGgCGGGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 48085 0.66 0.483596
Target:  5'- uGGC-ACCGAacgugcCGACCCaGCCguCGCCCGa -3'
miRNA:   3'- -UUGaUGGCUga----GCUGGG-CGG--GCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 11225 0.66 0.482635
Target:  5'- uACggACCGuucacugaggaucACUCGuguCCUGCCUGCCUGg -3'
miRNA:   3'- uUGa-UGGC-------------UGAGCu--GGGCGGGCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 64226 0.66 0.474027
Target:  5'- ---cGCCGGa-UGACCCGCgCCGgCCCGc -3'
miRNA:   3'- uugaUGGCUgaGCUGGGCG-GGC-GGGC- -5'
19274 3' -61.6 NC_004685.1 + 2226 0.66 0.464555
Target:  5'- uGGgUGCCGGgUgccaGACCUGCcugCCGCCCGg -3'
miRNA:   3'- -UUgAUGGCUgAg---CUGGGCG---GGCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 8511 0.66 0.464555
Target:  5'- cGCUACCGgaugggccgcAgUCGACCaGCCgGCUCGa -3'
miRNA:   3'- uUGAUGGC----------UgAGCUGGgCGGgCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 36850 0.66 0.464555
Target:  5'- uGAUcGCgCGGCUCGACaCCGCggCGUCCGg -3'
miRNA:   3'- -UUGaUG-GCUGAGCUG-GGCGg-GCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 48222 0.66 0.464555
Target:  5'- cGACgcCCGugUCGAacaCCGgCCGCCa- -3'
miRNA:   3'- -UUGauGGCugAGCUg--GGCgGGCGGgc -5'
19274 3' -61.6 NC_004685.1 + 55659 0.66 0.463614
Target:  5'- cGGCUGCCGuuggcgaACUCGA-CCGCCuCGUcgCCGg -3'
miRNA:   3'- -UUGAUGGC-------UGAGCUgGGCGG-GCG--GGC- -5'
19274 3' -61.6 NC_004685.1 + 32532 0.66 0.455183
Target:  5'- gAACcuucCCGGCgUCGGCCCgGCCaCGCCgGa -3'
miRNA:   3'- -UUGau--GGCUG-AGCUGGG-CGG-GCGGgC- -5'
19274 3' -61.6 NC_004685.1 + 48329 0.66 0.455183
Target:  5'- cAGCUGCCG--UCGGCCUGaauCgGCCCGu -3'
miRNA:   3'- -UUGAUGGCugAGCUGGGCg--GgCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 27914 0.66 0.455183
Target:  5'- uGCUGCgucGCUCGACCgCGCCgucaaCGCCCc -3'
miRNA:   3'- uUGAUGgc-UGAGCUGG-GCGG-----GCGGGc -5'
19274 3' -61.6 NC_004685.1 + 43821 0.66 0.445913
Target:  5'- ----cCCGACcugcgCGGgCCGCUCGCCCa -3'
miRNA:   3'- uugauGGCUGa----GCUgGGCGGGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 68586 0.66 0.445913
Target:  5'- aGGCUGaCGACUgaUGcCCCGCauCCGCCCGc -3'
miRNA:   3'- -UUGAUgGCUGA--GCuGGGCG--GGCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 11336 0.66 0.445913
Target:  5'- --gUGCgCGACcggCGACCCGCcCCGacaCCGa -3'
miRNA:   3'- uugAUG-GCUGa--GCUGGGCG-GGCg--GGC- -5'
19274 3' -61.6 NC_004685.1 + 7023 0.66 0.43675
Target:  5'- gGAgaAUCGGCUCGGUCUGCUCGCCgCGc -3'
miRNA:   3'- -UUgaUGGCUGAGCUGGGCGGGCGG-GC- -5'
19274 3' -61.6 NC_004685.1 + 49561 0.67 0.431304
Target:  5'- cAGCaACCGAucCUCGccgcgcaucgccagcACCCGCgCGCCCu -3'
miRNA:   3'- -UUGaUGGCU--GAGC---------------UGGGCGgGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 10238 0.67 0.427696
Target:  5'- gAGCUgACCGucaUCGACUgGCCgcUGCCCGa -3'
miRNA:   3'- -UUGA-UGGCug-AGCUGGgCGG--GCGGGC- -5'
19274 3' -61.6 NC_004685.1 + 36380 0.67 0.427696
Target:  5'- cGCgcCCGACggCGGCCUGggcaacuucCCCGCCCu -3'
miRNA:   3'- uUGauGGCUGa-GCUGGGC---------GGGCGGGc -5'
19274 3' -61.6 NC_004685.1 + 36458 0.67 0.418754
Target:  5'- ---cAUCGACUUcacCCCGCUCGCCUGg -3'
miRNA:   3'- uugaUGGCUGAGcu-GGGCGGGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.