miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19277 5' -54.2 NC_004685.1 + 31595 0.66 0.833088
Target:  5'- cAGcAGGUcuugcagcuGCUCGGGCAGgUUGGCGauCCa -3'
miRNA:   3'- -UCuUCCG---------CGAGUUCGUCaAGCCGU--GG- -5'
19277 5' -54.2 NC_004685.1 + 62582 0.66 0.824062
Target:  5'- aGGAAGuCGCUgAAGCAGUagUCGaCAUCc -3'
miRNA:   3'- -UCUUCcGCGAgUUCGUCA--AGCcGUGG- -5'
19277 5' -54.2 NC_004685.1 + 48067 0.66 0.814834
Target:  5'- cGAcGGC-UUCGcGCAGgaUGGCACCg -3'
miRNA:   3'- uCUuCCGcGAGUuCGUCaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 29784 0.66 0.814834
Target:  5'- --cGGcGCGCUCAAGguGUUCuucgaGGaCAUCg -3'
miRNA:   3'- ucuUC-CGCGAGUUCguCAAG-----CC-GUGG- -5'
19277 5' -54.2 NC_004685.1 + 27787 0.66 0.805415
Target:  5'- aGGAGGGCgaggaGCUUAAGCGGUacgUCGacuCGCUg -3'
miRNA:   3'- -UCUUCCG-----CGAGUUCGUCA---AGCc--GUGG- -5'
19277 5' -54.2 NC_004685.1 + 24319 0.66 0.805415
Target:  5'- ---uGGCGggCAGGCgGGUUCGGCGa- -3'
miRNA:   3'- ucuuCCGCgaGUUCG-UCAAGCCGUgg -5'
19277 5' -54.2 NC_004685.1 + 415 0.66 0.799676
Target:  5'- cGgcGGCgaGCUCGGggcuaagcaucagccGCGGUcggugaggUCGGCGCCa -3'
miRNA:   3'- uCuuCCG--CGAGUU---------------CGUCA--------AGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 52566 0.66 0.795815
Target:  5'- ---cGGcCGCUCGuuGCcg-UCGGCGCCg -3'
miRNA:   3'- ucuuCC-GCGAGUu-CGucaAGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 9890 0.66 0.795815
Target:  5'- ---uGGaCGaCUCGGGCGG--CGGCACCc -3'
miRNA:   3'- ucuuCC-GC-GAGUUCGUCaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 31338 0.66 0.787029
Target:  5'- uGGGAGGagauuuucucgaccaGCUCGcGCAGaUCGGCcagGCCc -3'
miRNA:   3'- -UCUUCCg--------------CGAGUuCGUCaAGCCG---UGG- -5'
19277 5' -54.2 NC_004685.1 + 18639 0.66 0.786044
Target:  5'- cGGucGGCgGCUacgaCGAGCAGUUCgagGGgGCCu -3'
miRNA:   3'- -UCuuCCG-CGA----GUUCGUCAAG---CCgUGG- -5'
19277 5' -54.2 NC_004685.1 + 53234 0.66 0.783082
Target:  5'- cGGucGCGC-CGGGCAGgccuaccagaaacggCGGCACCc -3'
miRNA:   3'- uCUucCGCGaGUUCGUCaa-------------GCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 52182 0.67 0.776115
Target:  5'- gGGAAGacGUGCUCcccGCAGcgUGGCGCUa -3'
miRNA:   3'- -UCUUC--CGCGAGuu-CGUCaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 32208 0.67 0.776115
Target:  5'- cGgcGGCgGCuUCAAGguGggCGGCGgCa -3'
miRNA:   3'- uCuuCCG-CG-AGUUCguCaaGCCGUgG- -5'
19277 5' -54.2 NC_004685.1 + 50478 0.67 0.776115
Target:  5'- --cAGuGCGCgUCGAGCuGgUCGGCGCg -3'
miRNA:   3'- ucuUC-CGCG-AGUUCGuCaAGCCGUGg -5'
19277 5' -54.2 NC_004685.1 + 39258 0.67 0.766037
Target:  5'- cGAAcGGCG-UCGGGCAacgccucgccguGUUCGGC-CCg -3'
miRNA:   3'- uCUU-CCGCgAGUUCGU------------CAAGCCGuGG- -5'
19277 5' -54.2 NC_004685.1 + 20786 0.67 0.766037
Target:  5'- ---cGGCGaugCGcGGCAGccccgUCGGCACCg -3'
miRNA:   3'- ucuuCCGCga-GU-UCGUCa----AGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 37931 0.67 0.755822
Target:  5'- gGGcGGGUGgUCgGAGCuGgcCGGCACCu -3'
miRNA:   3'- -UCuUCCGCgAG-UUCGuCaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 12354 0.67 0.755822
Target:  5'- -uGAGGCGCUaUGAGUAG--CGGCAUCc -3'
miRNA:   3'- ucUUCCGCGA-GUUCGUCaaGCCGUGG- -5'
19277 5' -54.2 NC_004685.1 + 8829 0.67 0.755822
Target:  5'- uGGAGGgGUUCGaugugcGGCAGg-CGGuCACCg -3'
miRNA:   3'- uCUUCCgCGAGU------UCGUCaaGCC-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.