miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19283 3' -54.5 NC_004685.1 + 3437 0.66 0.857739
Target:  5'- gGCuGACCCG-CugCG-AUCGUUGcGGCg -3'
miRNA:   3'- -CGuCUGGGCuGugGCcUAGUAGC-UCG- -5'
19283 3' -54.5 NC_004685.1 + 63293 0.66 0.857739
Target:  5'- aGCAGGCCCcGCACuuCGGGcaGUCGAuGUc -3'
miRNA:   3'- -CGUCUGGGcUGUG--GCCUagUAGCU-CG- -5'
19283 3' -54.5 NC_004685.1 + 13003 0.66 0.857739
Target:  5'- cGUGGgccuuGCCCGugGCCaGAUgGUCG-GCu -3'
miRNA:   3'- -CGUC-----UGGGCugUGGcCUAgUAGCuCG- -5'
19283 3' -54.5 NC_004685.1 + 59500 0.66 0.857739
Target:  5'- aGUuGACCuCGAC-CCGGc-CAUCGAGg -3'
miRNA:   3'- -CGuCUGG-GCUGuGGCCuaGUAGCUCg -5'
19283 3' -54.5 NC_004685.1 + 32600 0.66 0.857739
Target:  5'- cGCAGcACaCCGGCACCGGccCGcccccUGGGCc -3'
miRNA:   3'- -CGUC-UG-GGCUGUGGCCuaGUa----GCUCG- -5'
19283 3' -54.5 NC_004685.1 + 30492 0.66 0.852833
Target:  5'- gGCGGugCCGuuguaggugaGGAUCGUCGuGCc -3'
miRNA:   3'- -CGUCugGGCugugg-----CCUAGUAGCuCG- -5'
19283 3' -54.5 NC_004685.1 + 49609 0.66 0.849519
Target:  5'- gGCGGGCuggCCGACgaacGCCaGGUgGUCGAGg -3'
miRNA:   3'- -CGUCUG---GGCUG----UGGcCUAgUAGCUCg -5'
19283 3' -54.5 NC_004685.1 + 51170 0.66 0.849519
Target:  5'- uGCGGACgCG-CACCGaAUCcUCGGGg -3'
miRNA:   3'- -CGUCUGgGCuGUGGCcUAGuAGCUCg -5'
19283 3' -54.5 NC_004685.1 + 9740 0.66 0.844482
Target:  5'- gGCAGACCaccaugacgguguugCGGCACgGGuUCuccggUGAGCg -3'
miRNA:   3'- -CGUCUGG---------------GCUGUGgCCuAGua---GCUCG- -5'
19283 3' -54.5 NC_004685.1 + 9334 0.66 0.844482
Target:  5'- uCGGaACCCGACucgccggcgacgaagGCCGcggugaaacGAUCAUCGAGa -3'
miRNA:   3'- cGUC-UGGGCUG---------------UGGC---------CUAGUAGCUCg -5'
19283 3' -54.5 NC_004685.1 + 41804 0.66 0.841081
Target:  5'- --cGGCCCGGuuuccgucgaGCCGGugcgCAUCGAGUc -3'
miRNA:   3'- cguCUGGGCUg---------UGGCCua--GUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 8724 0.66 0.841081
Target:  5'- cGCAGGgCCaGAcCAUCGGcAUCccCGAGCu -3'
miRNA:   3'- -CGUCUgGG-CU-GUGGCC-UAGuaGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 47232 0.66 0.841081
Target:  5'- cGC-GACCCGACGCgaGGGUCu---GGCu -3'
miRNA:   3'- -CGuCUGGGCUGUGg-CCUAGuagcUCG- -5'
19283 3' -54.5 NC_004685.1 + 38324 0.66 0.841081
Target:  5'- cGCGGGCCUG--GCCG-AUCugcgCGAGCu -3'
miRNA:   3'- -CGUCUGGGCugUGGCcUAGua--GCUCG- -5'
19283 3' -54.5 NC_004685.1 + 46152 0.66 0.832434
Target:  5'- --uGGCCCgucgcguagggGugACCGGGgucgcccgCGUCGGGCg -3'
miRNA:   3'- cguCUGGG-----------CugUGGCCUa-------GUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 20162 0.66 0.832434
Target:  5'- cGCuGucCCCGACGCCGcGUCucgaCGAGUu -3'
miRNA:   3'- -CGuCu-GGGCUGUGGCcUAGua--GCUCG- -5'
19283 3' -54.5 NC_004685.1 + 41644 0.66 0.832434
Target:  5'- uGCAucGGCCUGucguCAUCGGcccgcuucaauUCAUCGAGCc -3'
miRNA:   3'- -CGU--CUGGGCu---GUGGCCu----------AGUAGCUCG- -5'
19283 3' -54.5 NC_004685.1 + 51426 0.66 0.832434
Target:  5'- aCAGGuCCUG-CugCGGcAUCGgugCGAGCa -3'
miRNA:   3'- cGUCU-GGGCuGugGCC-UAGUa--GCUCG- -5'
19283 3' -54.5 NC_004685.1 + 36547 0.66 0.832434
Target:  5'- -uGGGCCUGcACACCGGcgCGcccggCGAcGCg -3'
miRNA:   3'- cgUCUGGGC-UGUGGCCuaGUa----GCU-CG- -5'
19283 3' -54.5 NC_004685.1 + 56022 0.66 0.828919
Target:  5'- aGUAcGACCCGGCGaugUCGGAagggaugacuaggCGUCGGGUg -3'
miRNA:   3'- -CGU-CUGGGCUGU---GGCCUa------------GUAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.