miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19286 3' -61.4 NC_004685.1 + 9542 0.66 0.460621
Target:  5'- cAGGCGGAucgUCCUGGCCGCgcccCGCaauGGAg -3'
miRNA:   3'- aUCCGCUU---GGGGUCGGCGa---GUGg--CCU- -5'
19286 3' -61.4 NC_004685.1 + 40146 0.66 0.460621
Target:  5'- -cGGCGAuguCCUCGGCCauGCUCgGCCaGAg -3'
miRNA:   3'- auCCGCUu--GGGGUCGG--CGAG-UGGcCU- -5'
19286 3' -61.4 NC_004685.1 + 62813 0.66 0.460621
Target:  5'- cGGGgGAACCggGGCCGgCUgaGCCGGGg -3'
miRNA:   3'- aUCCgCUUGGggUCGGC-GAg-UGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 25996 0.66 0.451176
Target:  5'- cGGGCagGGugCgCAGCCGgUCGCCGa- -3'
miRNA:   3'- aUCCG--CUugGgGUCGGCgAGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 37568 0.66 0.451176
Target:  5'- uUGGGcCGAACUC--GCCGCUCAacCCGGc -3'
miRNA:   3'- -AUCC-GCUUGGGguCGGCGAGU--GGCCu -5'
19286 3' -61.4 NC_004685.1 + 32099 0.66 0.451176
Target:  5'- cGGGC--ACCCCGaacucGCCGCagcucaCACCGGGu -3'
miRNA:   3'- aUCCGcuUGGGGU-----CGGCGa-----GUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 8489 0.66 0.451176
Target:  5'- gAGGCuGAGCgCCGGugggguCCGCU-ACCGGAu -3'
miRNA:   3'- aUCCG-CUUGgGGUC------GGCGAgUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 36511 0.66 0.451176
Target:  5'- -cGGCGcccACCaCCGGCCGgUgcCACCGGu -3'
miRNA:   3'- auCCGCu--UGG-GGUCGGCgA--GUGGCCu -5'
19286 3' -61.4 NC_004685.1 + 4751 0.66 0.441838
Target:  5'- -cGGCGcGCUcguggUCGGCgCGCUgGCCGGAu -3'
miRNA:   3'- auCCGCuUGG-----GGUCG-GCGAgUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 3811 0.66 0.441838
Target:  5'- gUGGGCGAcugucacgguCCCCAcgguGCUGCUCAUCGc- -3'
miRNA:   3'- -AUCCGCUu---------GGGGU----CGGCGAGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 44326 0.66 0.441838
Target:  5'- cGGGCGcACCCUggucgacgcgguGGCCGCg-AUCGGGg -3'
miRNA:   3'- aUCCGCuUGGGG------------UCGGCGagUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 51991 0.66 0.441838
Target:  5'- aGGGCGGucACCCUgaucaguGCCGa-CGCCGGGg -3'
miRNA:   3'- aUCCGCU--UGGGGu------CGGCgaGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 55553 0.66 0.441838
Target:  5'- cGGGCucgcccAGCUCCAGCCGCUgAUCGu- -3'
miRNA:   3'- aUCCGc-----UUGGGGUCGGCGAgUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 14690 0.66 0.43261
Target:  5'- gAGGCGGugCCCgaggagggcaAGCUGCaCGCCGa- -3'
miRNA:   3'- aUCCGCUugGGG----------UCGGCGaGUGGCcu -5'
19286 3' -61.4 NC_004685.1 + 65775 0.66 0.431694
Target:  5'- -cGGUGAACCUCacacccgaaGGCCagacgguGCUCgACCGGAu -3'
miRNA:   3'- auCCGCUUGGGG---------UCGG-------CGAG-UGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 58950 0.66 0.423496
Target:  5'- gAGcGCguuGAugUCCAGCCGCacCACCGGc -3'
miRNA:   3'- aUC-CG---CUugGGGUCGGCGa-GUGGCCu -5'
19286 3' -61.4 NC_004685.1 + 8790 0.66 0.423496
Target:  5'- aGGGCuuGAAgCUCAcGCCGCggUCGCUGGAc -3'
miRNA:   3'- aUCCG--CUUgGGGU-CGGCG--AGUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 54430 0.66 0.423496
Target:  5'- -cGGCGAcaGCCCaUAGCCauGCUCgGCCaGGAa -3'
miRNA:   3'- auCCGCU--UGGG-GUCGG--CGAG-UGG-CCU- -5'
19286 3' -61.4 NC_004685.1 + 45199 0.66 0.422591
Target:  5'- -cGGCGAccuguacGCCgCGGCCGa--GCCGGGu -3'
miRNA:   3'- auCCGCU-------UGGgGUCGGCgagUGGCCU- -5'
19286 3' -61.4 NC_004685.1 + 56881 0.66 0.414498
Target:  5'- -cGGCacGCCcgCCAGCCGCUCGgcCUGGGc -3'
miRNA:   3'- auCCGcuUGG--GGUCGGCGAGU--GGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.