miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19287 5' -58.8 NC_004685.1 + 38458 0.65 0.608556
Target:  5'- -aGGCCCGagccgacgcccuuGCCAcCGGGGAAC-CCAAg -3'
miRNA:   3'- agCUGGGC-------------CGGUaGCUCCUUGcGGUU- -5'
19287 5' -58.8 NC_004685.1 + 2985 0.66 0.599022
Target:  5'- aUGGCgCGGUCGUCGGcGuGCGCCAc -3'
miRNA:   3'- aGCUGgGCCGGUAGCUcCuUGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 438 0.66 0.599022
Target:  5'- aUCaGCCgCGGUCggUGAGGucGGCGCCAAa -3'
miRNA:   3'- -AGcUGG-GCCGGuaGCUCC--UUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 53926 0.66 0.592677
Target:  5'- -aGGCCCaGGCCAcgUCGAugaGGGuccgcagcuuguccuGCGCCGAg -3'
miRNA:   3'- agCUGGG-CCGGU--AGCU---CCU---------------UGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 28919 0.66 0.588453
Target:  5'- uUCGACCCgGGCCGcUGGGcGGCGgCAAc -3'
miRNA:   3'- -AGCUGGG-CCGGUaGCUCcUUGCgGUU- -5'
19287 5' -58.8 NC_004685.1 + 3804 0.66 0.588453
Target:  5'- cCGugCUGGCUcgcaucucGUCGGgcgacGGGACGCCGc -3'
miRNA:   3'- aGCugGGCCGG--------UAGCU-----CCUUGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 20466 0.66 0.588453
Target:  5'- uUCGGCCgcguUGGCCA-CGcGGA-CGCCAGc -3'
miRNA:   3'- -AGCUGG----GCCGGUaGCuCCUuGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 33826 0.66 0.588453
Target:  5'- -gGGCgCUGGCCGUCGcguGGAACaccucgauGCCAGg -3'
miRNA:   3'- agCUG-GGCCGGUAGCu--CCUUG--------CGGUU- -5'
19287 5' -58.8 NC_004685.1 + 22884 0.66 0.577919
Target:  5'- cCGACaUCGGCCGcugacguuUCGGGaGAcCGCCGAg -3'
miRNA:   3'- aGCUG-GGCCGGU--------AGCUC-CUuGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 14312 0.66 0.577919
Target:  5'- -gGACaCCGGCgaccucgacgaCAUCGAGcaguggauGAACGCCAAc -3'
miRNA:   3'- agCUG-GGCCG-----------GUAGCUC--------CUUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 50771 0.66 0.577919
Target:  5'- cUCG-CCCGcGCCGUCGcGGcGCGCg-- -3'
miRNA:   3'- -AGCuGGGC-CGGUAGCuCCuUGCGguu -5'
19287 5' -58.8 NC_004685.1 + 64530 0.66 0.567426
Target:  5'- aCGACgUGGCCGUCGAGug-UGCCc- -3'
miRNA:   3'- aGCUGgGCCGGUAGCUCcuuGCGGuu -5'
19287 5' -58.8 NC_004685.1 + 62953 0.66 0.556982
Target:  5'- cCGAUCCGGCgGggugacgUGAGuGAACGUCAc -3'
miRNA:   3'- aGCUGGGCCGgUa------GCUC-CUUGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 32808 0.67 0.546594
Target:  5'- gCGGCCgCGGCCGaCGAuguugccGGACGCCGc -3'
miRNA:   3'- aGCUGG-GCCGGUaGCUc------CUUGCGGUu -5'
19287 5' -58.8 NC_004685.1 + 2207 0.67 0.546594
Target:  5'- uUCGACCCacaGGCCGgaUUGGGugccGggUGCCAGa -3'
miRNA:   3'- -AGCUGGG---CCGGU--AGCUC----CuuGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 29170 0.67 0.546594
Target:  5'- cCGAacagUCCGGCC----AGGAACGCCAGc -3'
miRNA:   3'- aGCU----GGGCCGGuagcUCCUUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 32545 0.67 0.536269
Target:  5'- gUCGGCCCGGCCA-CGccGGAgcagaucgcgGCGCa-- -3'
miRNA:   3'- -AGCUGGGCCGGUaGCu-CCU----------UGCGguu -5'
19287 5' -58.8 NC_004685.1 + 33173 0.67 0.536269
Target:  5'- gUGGCaCCGGCCggUGGuGGGCGCCGGu -3'
miRNA:   3'- aGCUG-GGCCGGuaGCUcCUUGCGGUU- -5'
19287 5' -58.8 NC_004685.1 + 54980 0.67 0.515831
Target:  5'- aCGGgCCGcGCCGUUGGuGAugGCCAc -3'
miRNA:   3'- aGCUgGGC-CGGUAGCUcCUugCGGUu -5'
19287 5' -58.8 NC_004685.1 + 36888 0.67 0.515831
Target:  5'- gUCGGCCgCGGCCG-CG-GGcACGUCGGg -3'
miRNA:   3'- -AGCUGG-GCCGGUaGCuCCuUGCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.