miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19290 3' -58.6 NC_004685.1 + 1595 0.66 0.652176
Target:  5'- cGUGGUgaGG-GCGAGgaCCGCCUGCUGc -3'
miRNA:   3'- -CGCCGgaCCaUGCUUa-GGUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 12420 0.66 0.652176
Target:  5'- -gGGCaugUGGaGCGGcugugaCCGCCCGCCGc -3'
miRNA:   3'- cgCCGg--ACCaUGCUua----GGUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 48348 0.66 0.652176
Target:  5'- uCGGCCcgucgcacagGGUGCGggUgacgaagcgcaUCGCCuCGCCGc -3'
miRNA:   3'- cGCCGGa---------CCAUGCuuA-----------GGUGG-GCGGC- -5'
19290 3' -58.6 NC_004685.1 + 48298 0.66 0.650079
Target:  5'- cGCGucGCCguagaaguugcgGGcACGggUCCAgCUGCCGu -3'
miRNA:   3'- -CGC--CGGa-----------CCaUGCuuAGGUgGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 19987 0.66 0.645882
Target:  5'- -aGGCCcgcgcccggUGGUucgccacccgucugcGCGAGUCgggcgACCCGCCGg -3'
miRNA:   3'- cgCCGG---------ACCA---------------UGCUUAGg----UGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 33123 0.66 0.641684
Target:  5'- cGCGGCgUGGgacGCGAAgaaGCCUGgCGa -3'
miRNA:   3'- -CGCCGgACCa--UGCUUaggUGGGCgGC- -5'
19290 3' -58.6 NC_004685.1 + 30704 0.66 0.641684
Target:  5'- cGgGGUCgcGGUACGcg-CCGCCguCGCCGa -3'
miRNA:   3'- -CgCCGGa-CCAUGCuuaGGUGG--GCGGC- -5'
19290 3' -58.6 NC_004685.1 + 14361 0.66 0.641684
Target:  5'- aGCGGCUga-UGCGGG-CCGCUgGCCGc -3'
miRNA:   3'- -CGCCGGaccAUGCUUaGGUGGgCGGC- -5'
19290 3' -58.6 NC_004685.1 + 3216 0.66 0.641684
Target:  5'- -aGGUgUGGUACGuccCCACCaaggcgGCCGa -3'
miRNA:   3'- cgCCGgACCAUGCuuaGGUGGg-----CGGC- -5'
19290 3' -58.6 NC_004685.1 + 41359 0.66 0.638535
Target:  5'- -aGGCgCUGGUGaucuucaaggacacCGGcaccgcAUCCACCuCGCCGc -3'
miRNA:   3'- cgCCG-GACCAU--------------GCU------UAGGUGG-GCGGC- -5'
19290 3' -58.6 NC_004685.1 + 42306 0.66 0.620687
Target:  5'- cGCGGC---GUACG--UCUugCCGCCGg -3'
miRNA:   3'- -CGCCGgacCAUGCuuAGGugGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 60910 0.66 0.620687
Target:  5'- aUGGCCgUGGUGgucGUCCGCuuGCCu -3'
miRNA:   3'- cGCCGG-ACCAUgcuUAGGUGggCGGc -5'
19290 3' -58.6 NC_004685.1 + 5489 0.66 0.620687
Target:  5'- cGUGGCCgacaUGGUgGCGg--CCAUcgCCGCCGa -3'
miRNA:   3'- -CGCCGG----ACCA-UGCuuaGGUG--GGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 53009 0.66 0.620687
Target:  5'- -gGGCCUcGUugGGuuccAUCaCACCUGCCu -3'
miRNA:   3'- cgCCGGAcCAugCU----UAG-GUGGGCGGc -5'
19290 3' -58.6 NC_004685.1 + 20731 0.66 0.620687
Target:  5'- cCGGUCaaGGUGCGGAUCaggCugCCGCUa -3'
miRNA:   3'- cGCCGGa-CCAUGCUUAG---GugGGCGGc -5'
19290 3' -58.6 NC_004685.1 + 2217 0.66 0.617539
Target:  5'- -aGGCCggauugGGUGcCGggUgccagaccugccugCCGCCCgGCCGg -3'
miRNA:   3'- cgCCGGa-----CCAU-GCuuA--------------GGUGGG-CGGC- -5'
19290 3' -58.6 NC_004685.1 + 36604 0.66 0.610198
Target:  5'- -aGGaCCUGG--CGggUgCGCUCGCCGc -3'
miRNA:   3'- cgCC-GGACCauGCuuAgGUGGGCGGC- -5'
19290 3' -58.6 NC_004685.1 + 26317 0.66 0.610198
Target:  5'- aGCGGUUcgGGUAgGAgccGUCCugCUGCgCGa -3'
miRNA:   3'- -CGCCGGa-CCAUgCU---UAGGugGGCG-GC- -5'
19290 3' -58.6 NC_004685.1 + 25324 0.66 0.610198
Target:  5'- gGUGGCCuUGGcGCaucGUCUugCCGCCc -3'
miRNA:   3'- -CGCCGG-ACCaUGcu-UAGGugGGCGGc -5'
19290 3' -58.6 NC_004685.1 + 11363 0.66 0.599726
Target:  5'- cGCaGGgCUGGUGa----CCACUCGCCGg -3'
miRNA:   3'- -CG-CCgGACCAUgcuuaGGUGGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.