miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19294 3' -55.7 NC_004685.1 + 58097 0.66 0.789587
Target:  5'- cCUCGGCGaugugaggGCGUUCGAuUUCGCGCu- -3'
miRNA:   3'- -GAGCCGCgg------CGUAAGCU-AGGUGUGcu -5'
19294 3' -55.7 NC_004685.1 + 57709 0.66 0.789587
Target:  5'- gUCGaGCGCC---UUCGAgcacgCCGCGCGGa -3'
miRNA:   3'- gAGC-CGCGGcguAAGCUa----GGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 1317 0.66 0.789587
Target:  5'- --gGGCGCaCGCAcacUCGGacCCGCGCGGc -3'
miRNA:   3'- gagCCGCG-GCGUa--AGCUa-GGUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 29032 0.66 0.779939
Target:  5'- -gCGGuCGCCGCGU-CGcaGUCCAuCGCGc -3'
miRNA:   3'- gaGCC-GCGGCGUAaGC--UAGGU-GUGCu -5'
19294 3' -55.7 NC_004685.1 + 17183 0.66 0.779939
Target:  5'- -gCGGCGCUGCGccUGAUCCAgAUc- -3'
miRNA:   3'- gaGCCGCGGCGUaaGCUAGGUgUGcu -5'
19294 3' -55.7 NC_004685.1 + 43055 0.66 0.779939
Target:  5'- gUCGGUGCgGCGgugcucgccgCGGUCgGCugGGc -3'
miRNA:   3'- gAGCCGCGgCGUaa--------GCUAGgUGugCU- -5'
19294 3' -55.7 NC_004685.1 + 63017 0.66 0.770144
Target:  5'- -cCGGCGUgggCGCGgugUCGAcCCACACc- -3'
miRNA:   3'- gaGCCGCG---GCGUa--AGCUaGGUGUGcu -5'
19294 3' -55.7 NC_004685.1 + 30212 0.66 0.760214
Target:  5'- cCUgGGCGCCGCGgcc-AUCUGgGCGAc -3'
miRNA:   3'- -GAgCCGCGGCGUaagcUAGGUgUGCU- -5'
19294 3' -55.7 NC_004685.1 + 49514 0.66 0.760214
Target:  5'- cCUCGGggcaGCCGUAUUCGAcCCcuGCAUa- -3'
miRNA:   3'- -GAGCCg---CGGCGUAAGCUaGG--UGUGcu -5'
19294 3' -55.7 NC_004685.1 + 39591 0.66 0.760214
Target:  5'- -cCGGCGUaCGUug-CGAUCgGCGCGGc -3'
miRNA:   3'- gaGCCGCG-GCGuaaGCUAGgUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 69449 0.66 0.760214
Target:  5'- gUCGGUGUgCGCGUUCGucaaACGCGGg -3'
miRNA:   3'- gAGCCGCG-GCGUAAGCuaggUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 63079 0.66 0.760214
Target:  5'- -gCGGCGaCCGUcgUCGucagGUUCGCugGGg -3'
miRNA:   3'- gaGCCGC-GGCGuaAGC----UAGGUGugCU- -5'
19294 3' -55.7 NC_004685.1 + 290 0.66 0.760214
Target:  5'- uUCGGgGUCGUcgUCGAaCCcgaugcccgACACGAu -3'
miRNA:   3'- gAGCCgCGGCGuaAGCUaGG---------UGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 39420 0.66 0.758213
Target:  5'- gUCGGCGCCGCGccaggaggcaGAUCCuuGCc- -3'
miRNA:   3'- gAGCCGCGGCGUaag-------CUAGGugUGcu -5'
19294 3' -55.7 NC_004685.1 + 66369 0.66 0.750159
Target:  5'- aUCGGCcaguuuGCCGUcgUCGAcgaugCgCACACGGc -3'
miRNA:   3'- gAGCCG------CGGCGuaAGCUa----G-GUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 57581 0.66 0.750159
Target:  5'- -aUGGCGuuGCggUCGAUUUcCACGGc -3'
miRNA:   3'- gaGCCGCggCGuaAGCUAGGuGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 6332 0.66 0.750159
Target:  5'- cCUCGGCGCUgaagGUGUUCGGuuUCCgaACGCa- -3'
miRNA:   3'- -GAGCCGCGG----CGUAAGCU--AGG--UGUGcu -5'
19294 3' -55.7 NC_004685.1 + 58341 0.66 0.73999
Target:  5'- cCUCGGUGUCGgGgcgggucgcCGGUCgCGCACGGc -3'
miRNA:   3'- -GAGCCGCGGCgUaa-------GCUAG-GUGUGCU- -5'
19294 3' -55.7 NC_004685.1 + 49995 0.67 0.729718
Target:  5'- cCUCGGCccgccacgGCCGC--UCGugcagCCACACGu -3'
miRNA:   3'- -GAGCCG--------CGGCGuaAGCua---GGUGUGCu -5'
19294 3' -55.7 NC_004685.1 + 26530 0.67 0.729718
Target:  5'- uCUCGcCGCCGCAcUCGGUgCGCGuCGc -3'
miRNA:   3'- -GAGCcGCGGCGUaAGCUAgGUGU-GCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.