miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19294 5' -60.7 NC_004685.1 + 6652 0.66 0.56316
Target:  5'- --aUGCgCGGUgccaUCGGUgaCGCGCUGCg -3'
miRNA:   3'- ggaGCG-GCCAg---AGCCGaaGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 52720 0.66 0.56316
Target:  5'- cCCUCGCCGGcCg-GGCagUCGgGuuGa -3'
miRNA:   3'- -GGAGCGGCCaGagCCGa-AGCgCggCg -5'
19294 5' -60.7 NC_004685.1 + 48651 0.66 0.56316
Target:  5'- aCUCGCCGGauggccacuUCUCuGuCUgaUCGCgguaccGCCGCg -3'
miRNA:   3'- gGAGCGGCC---------AGAGcC-GA--AGCG------CGGCG- -5'
19294 5' -60.7 NC_004685.1 + 30701 0.66 0.553069
Target:  5'- gCUCGg-GGUCgCGGUa-CGCGCCGCc -3'
miRNA:   3'- gGAGCggCCAGaGCCGaaGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 60119 0.66 0.553069
Target:  5'- aCgUCGuuGGggaUCaGGUcgCGCGCCGUg -3'
miRNA:   3'- -GgAGCggCCag-AG-CCGaaGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 38824 0.66 0.553069
Target:  5'- aCCU-GCCGuUCgacaauUCGGCUgcCGCGCCGg -3'
miRNA:   3'- -GGAgCGGCcAG------AGCCGAa-GCGCGGCg -5'
19294 5' -60.7 NC_004685.1 + 63242 0.66 0.552063
Target:  5'- --gUGCCGGgcugUUCGGgccaggugaugccCUUgGCGCCGCc -3'
miRNA:   3'- ggaGCGGCCa---GAGCC-------------GAAgCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 56126 0.66 0.543032
Target:  5'- uCC-CGCCGGUCguUCGGg-UUGCGgacccucaagaCCGCg -3'
miRNA:   3'- -GGaGCGGCCAG--AGCCgaAGCGC-----------GGCG- -5'
19294 5' -60.7 NC_004685.1 + 32826 0.66 0.543032
Target:  5'- -gUUGCCGGaCgccgCGGUgUCGaGCCGCg -3'
miRNA:   3'- ggAGCGGCCaGa---GCCGaAGCgCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 13364 0.66 0.543032
Target:  5'- aUUCGCCaGGgugcugCUCGaCUUCGaggugaaGCCGCa -3'
miRNA:   3'- gGAGCGG-CCa-----GAGCcGAAGCg------CGGCG- -5'
19294 5' -60.7 NC_004685.1 + 31812 0.66 0.543032
Target:  5'- gUCUCGCCGacg-CGGCUggcugacgcucCGaCGCCGCu -3'
miRNA:   3'- -GGAGCGGCcagaGCCGAa----------GC-GCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 54915 0.66 0.543032
Target:  5'- gCCaCGUCGG-CUUGGCUga--GCCGCu -3'
miRNA:   3'- -GGaGCGGCCaGAGCCGAagcgCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 31836 0.66 0.533056
Target:  5'- uCC-CGCUGccgCagGGCUaUGCGCCGCa -3'
miRNA:   3'- -GGaGCGGCca-GagCCGAaGCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 64168 0.66 0.532062
Target:  5'- gCUCGuagaaccCCGGccgCUCGGCggCGaugGCCGCc -3'
miRNA:   3'- gGAGC-------GGCCa--GAGCCGaaGCg--CGGCG- -5'
19294 5' -60.7 NC_004685.1 + 50821 0.66 0.527102
Target:  5'- --cCGCgCGGUCagcuuucugaucugcUCGGCggugCGCGCCuGCc -3'
miRNA:   3'- ggaGCG-GCCAG---------------AGCCGaa--GCGCGG-CG- -5'
19294 5' -60.7 NC_004685.1 + 24922 0.66 0.523147
Target:  5'- gCC-CGCgCGGUgUCGGCgUCGgGuCCGa -3'
miRNA:   3'- -GGaGCG-GCCAgAGCCGaAGCgC-GGCg -5'
19294 5' -60.7 NC_004685.1 + 30767 0.66 0.513308
Target:  5'- gCUCaaGCCGGgugaCUcCGGCUUCGgcaaGCCGg -3'
miRNA:   3'- gGAG--CGGCCa---GA-GCCGAAGCg---CGGCg -5'
19294 5' -60.7 NC_004685.1 + 33092 0.66 0.513308
Target:  5'- aCC-CGCCaGGUcCUCGGCgUCG-GCCa- -3'
miRNA:   3'- -GGaGCGG-CCA-GAGCCGaAGCgCGGcg -5'
19294 5' -60.7 NC_004685.1 + 36251 0.66 0.51135
Target:  5'- cCUUCGCCGaagaUgUCGGCgagcaggccggUGCGCUGCg -3'
miRNA:   3'- -GGAGCGGCc---AgAGCCGaa---------GCGCGGCG- -5'
19294 5' -60.7 NC_004685.1 + 69569 0.67 0.504519
Target:  5'- cCCgCGCCGGUCgccgcuaccgccuagCGGCcaaCGgGCgCGCg -3'
miRNA:   3'- -GGaGCGGCCAGa--------------GCCGaa-GCgCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.