miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19298 5' -58.1 NC_004685.1 + 10773 0.66 0.69128
Target:  5'- uCGGCGAgucGGAgucgaggcUGCGCGgcaucuucuccaagaUCGACgCGCUCg -3'
miRNA:   3'- -GCCGCU---CCU--------ACGCGC---------------AGCUGaGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 53398 0.66 0.687139
Target:  5'- gCGGUGAGGAUcaCGaUGUCG-C-CGCCCu -3'
miRNA:   3'- -GCCGCUCCUAc-GC-GCAGCuGaGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 61575 0.66 0.687139
Target:  5'- cCGGCcucGGccaGCGCGUUGAC-CACCg -3'
miRNA:   3'- -GCCGcu-CCua-CGCGCAGCUGaGUGGg -5'
19298 5' -58.1 NC_004685.1 + 20807 0.66 0.687139
Target:  5'- uGGCaGAGG-UGCGgaaCGgcacCGGCUgGCCCa -3'
miRNA:   3'- gCCG-CUCCuACGC---GCa---GCUGAgUGGG- -5'
19298 5' -58.1 NC_004685.1 + 42281 0.66 0.684028
Target:  5'- uGGCGAGcauguaggcauagcGAUGCGCGgcguaCGuCUUGCCg -3'
miRNA:   3'- gCCGCUC--------------CUACGCGCa----GCuGAGUGGg -5'
19298 5' -58.1 NC_004685.1 + 33755 0.66 0.680913
Target:  5'- cCGGCGAGacguGGUGCGuCGUCGcgggugucggcgacaGCgaccgCACCUu -3'
miRNA:   3'- -GCCGCUC----CUACGC-GCAGC---------------UGa----GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 59308 0.66 0.676754
Target:  5'- gCGGCGucGAUgGCgGCGUCgcggGugUUGCCCu -3'
miRNA:   3'- -GCCGCucCUA-CG-CGCAG----CugAGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 9550 0.66 0.676754
Target:  5'- gCGGCGAuGGccacgGCGCG-CGACcugaUC-CCCa -3'
miRNA:   3'- -GCCGCU-CCua---CGCGCaGCUG----AGuGGG- -5'
19298 5' -58.1 NC_004685.1 + 38305 0.66 0.676754
Target:  5'- uCGGCGAGGAcggugaagGCGCGg-GcCUgGCCg -3'
miRNA:   3'- -GCCGCUCCUa-------CGCGCagCuGAgUGGg -5'
19298 5' -58.1 NC_004685.1 + 36266 0.66 0.673631
Target:  5'- uCGGCGAGcaggccggugcgcuGcgGCGCGgCGAucauCUCGCCg -3'
miRNA:   3'- -GCCGCUC--------------CuaCGCGCaGCU----GAGUGGg -5'
19298 5' -58.1 NC_004685.1 + 7552 0.66 0.666332
Target:  5'- --aCGAGGGUGaGCGUUGGaUCGCCUa -3'
miRNA:   3'- gccGCUCCUACgCGCAGCUgAGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 14014 0.66 0.666332
Target:  5'- cCGGCGAcGAgGCG-GUCGAgUUCGCCa -3'
miRNA:   3'- -GCCGCUcCUaCGCgCAGCU-GAGUGGg -5'
19298 5' -58.1 NC_004685.1 + 19939 0.66 0.666332
Target:  5'- uGGCGAcgagacgcuGGAgcUGCGCG-CGACgaugCACUg -3'
miRNA:   3'- gCCGCU---------CCU--ACGCGCaGCUGa---GUGGg -5'
19298 5' -58.1 NC_004685.1 + 65606 0.66 0.665287
Target:  5'- uGGCGAuGAagcacGCGCaGUCGgcgcagcagaaaaACUCGCCCu -3'
miRNA:   3'- gCCGCUcCUa----CGCG-CAGC-------------UGAGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 66552 0.66 0.65588
Target:  5'- uCGGCGc-GAUGaGCGaCGACggccUCACCCa -3'
miRNA:   3'- -GCCGCucCUACgCGCaGCUG----AGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 18491 0.66 0.65588
Target:  5'- uGGUGcGGAUGCG-GUCGAagUACCUc -3'
miRNA:   3'- gCCGCuCCUACGCgCAGCUgaGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 69595 0.66 0.65588
Target:  5'- gCGGCcaacGGgcGCGCGUCcacacgGGCgcgCGCCCg -3'
miRNA:   3'- -GCCGcu--CCuaCGCGCAG------CUGa--GUGGG- -5'
19298 5' -58.1 NC_004685.1 + 6262 0.66 0.65588
Target:  5'- uGGaCGAGGcgugcaucgagGUGCGCGacaaGCUCAUCCa -3'
miRNA:   3'- gCC-GCUCC-----------UACGCGCagc-UGAGUGGG- -5'
19298 5' -58.1 NC_004685.1 + 31206 0.66 0.654833
Target:  5'- aGGCGGgccuuGGGUuccccgguggcaaGgGCGUCGGCUCggGCCUg -3'
miRNA:   3'- gCCGCU-----CCUA-------------CgCGCAGCUGAG--UGGG- -5'
19298 5' -58.1 NC_004685.1 + 63123 0.66 0.649598
Target:  5'- uGGCGAGcacGAUGCGCaccugcugcuugucgGUgGGCUgGCCg -3'
miRNA:   3'- gCCGCUC---CUACGCG---------------CAgCUGAgUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.