miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19331 3' -55.7 NC_004685.1 + 7712 0.66 0.789587
Target:  5'- --aCGAACCaaCCGACUG-GACGAACu -3'
miRNA:   3'- cacGCUUGGc-GGCUGGCuCUGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 11271 0.66 0.789587
Target:  5'- -gGUGAucCCGCUGaACCG-GACGAugGg -3'
miRNA:   3'- caCGCUu-GGCGGC-UGGCuCUGCUugU- -5'
19331 3' -55.7 NC_004685.1 + 9110 0.66 0.789587
Target:  5'- -cGCGAACUGCaCcGCCcucGGugGAGCAa -3'
miRNA:   3'- caCGCUUGGCG-GcUGGc--UCugCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 35289 0.66 0.779939
Target:  5'- -cGUGGACCugugGCUG-CCGGgcGACGAGCAg -3'
miRNA:   3'- caCGCUUGG----CGGCuGGCU--CUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 31310 0.66 0.779939
Target:  5'- -cGCGAacGCCGCCuuGCCGAGccACGAc-- -3'
miRNA:   3'- caCGCU--UGGCGGc-UGGCUC--UGCUugu -5'
19331 3' -55.7 NC_004685.1 + 12212 0.66 0.779939
Target:  5'- -gGCGGGCCaUCGACuuCGAGcCGAGCGa -3'
miRNA:   3'- caCGCUUGGcGGCUG--GCUCuGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 49671 0.66 0.770144
Target:  5'- -gGCGggUCGcCCGACuCGcgcAGACGggUg -3'
miRNA:   3'- caCGCuuGGC-GGCUG-GC---UCUGCuuGu -5'
19331 3' -55.7 NC_004685.1 + 5573 0.66 0.770144
Target:  5'- -gGCGAGCCGgUGAgCuGGGCGGAUg -3'
miRNA:   3'- caCGCUUGGCgGCUgGcUCUGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 44487 0.66 0.770144
Target:  5'- -cGCuGAACCGacCCGGCUGAGGguguucggaaacCGAACAc -3'
miRNA:   3'- caCG-CUUGGC--GGCUGGCUCU------------GCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 12594 0.66 0.770144
Target:  5'- cGUGUccGAACgCGCCG-CCGAGGugcgcaaggcCGGGCAg -3'
miRNA:   3'- -CACG--CUUG-GCGGCuGGCUCU----------GCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 28136 0.66 0.769157
Target:  5'- -cGC-AGCCGUCGACgCGAugcguucagucgcGACGAACGc -3'
miRNA:   3'- caCGcUUGGCGGCUG-GCU-------------CUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 26345 0.66 0.760214
Target:  5'- -cGaCGAGgCGauGGCCGAGuACGAGCAg -3'
miRNA:   3'- caC-GCUUgGCggCUGGCUC-UGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 4373 0.66 0.760214
Target:  5'- -cGCGucaaauGGCCGCUGugCGAGAacugcggccaCGGACGc -3'
miRNA:   3'- caCGC------UUGGCGGCugGCUCU----------GCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 30597 0.66 0.759214
Target:  5'- -gGCGAACCcgucgGCCGcguugccacccuuGCCGAGcACGAugAc -3'
miRNA:   3'- caCGCUUGG-----CGGC-------------UGGCUC-UGCUugU- -5'
19331 3' -55.7 NC_004685.1 + 13886 0.66 0.750159
Target:  5'- gGUGCuGGAggccaaCGuCCGcACCGAGGCGAGCc -3'
miRNA:   3'- -CACG-CUUg-----GC-GGC-UGGCUCUGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 25803 0.66 0.73999
Target:  5'- -cGCGugguuGCagggGCCGACCGcGACGAugGu -3'
miRNA:   3'- caCGCu----UGg---CGGCUGGCuCUGCUugU- -5'
19331 3' -55.7 NC_004685.1 + 24685 0.66 0.73999
Target:  5'- -aGCGAACCGuuGGCCGGcuuGAUGu--- -3'
miRNA:   3'- caCGCUUGGCggCUGGCU---CUGCuugu -5'
19331 3' -55.7 NC_004685.1 + 468 0.66 0.73999
Target:  5'- -cGUG-GCCGCC-ACCaugucgGAGACGGACAa -3'
miRNA:   3'- caCGCuUGGCGGcUGG------CUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 58720 0.66 0.73999
Target:  5'- -cGaCGggUCGuuGGCCGucaucauGACGAACGc -3'
miRNA:   3'- caC-GCuuGGCggCUGGCu------CUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 32398 0.66 0.73999
Target:  5'- cUGCucGGCCGCCGACCcGA-ACGGACc -3'
miRNA:   3'- cACGc-UUGGCGGCUGG-CUcUGCUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.