miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19453 5' -59.6 NC_004685.1 + 36380 0.66 0.590573
Target:  5'- cGCGCCCgacggCGGCCUgGGcaacuuccccgcccuGGUGCgCGGCGa -3'
miRNA:   3'- -CGUGGG-----GCUGGAgCC---------------CUACGaGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 59804 0.66 0.586412
Target:  5'- cGUA-CCCGGCCUUGGcGAUGg-CGGUGa -3'
miRNA:   3'- -CGUgGGGCUGGAGCC-CUACgaGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 620 0.66 0.586412
Target:  5'- cGCugCUggcgggcgaCGACCUCGuGcaagucaacgcGGUGCUCAGCa -3'
miRNA:   3'- -CGugGG---------GCUGGAGC-C-----------CUACGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 2364 0.66 0.585373
Target:  5'- gGCACCCCgGGCCagcguUCGGccagcacGA-GCUUGGCGg -3'
miRNA:   3'- -CGUGGGG-CUGG-----AGCC-------CUaCGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 13850 0.66 0.576037
Target:  5'- aCACCCUGACCgCGGuGcUGUUCGGg- -3'
miRNA:   3'- cGUGGGGCUGGaGCC-CuACGAGUCgc -5'
19453 5' -59.6 NC_004685.1 + 8265 0.66 0.555419
Target:  5'- ---aCCCGGCCUCGugcgcGGcgGCaaucUCAGCGg -3'
miRNA:   3'- cgugGGGCUGGAGC-----CCuaCG----AGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 44340 0.66 0.555419
Target:  5'- gGCGCCaaGAUCgggcCGGGcUGCUgCGGCGc -3'
miRNA:   3'- -CGUGGggCUGGa---GCCCuACGA-GUCGC- -5'
19453 5' -59.6 NC_004685.1 + 69634 0.66 0.54519
Target:  5'- gGCugCCggggUGGCCg-GGGAgcUGCUCGGCu -3'
miRNA:   3'- -CGugGG----GCUGGagCCCU--ACGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 64181 0.66 0.54519
Target:  5'- -gACCCCGACCagaccugCGGGAcGCgggGGUGg -3'
miRNA:   3'- cgUGGGGCUGGa------GCCCUaCGag-UCGC- -5'
19453 5' -59.6 NC_004685.1 + 30149 0.66 0.541115
Target:  5'- gGCAgCCCCGGCCaucgcagguaucgCGGGAccggcuaucgcUGCgacCAGCGc -3'
miRNA:   3'- -CGU-GGGGCUGGa------------GCCCU-----------ACGa--GUCGC- -5'
19453 5' -59.6 NC_004685.1 + 24951 0.66 0.535022
Target:  5'- -gACCCCGACg-CGGGuucGCUgGGCu -3'
miRNA:   3'- cgUGGGGCUGgaGCCCua-CGAgUCGc -5'
19453 5' -59.6 NC_004685.1 + 64950 0.66 0.535022
Target:  5'- aGCGCgCCGACCac-GGAUGCcccUCGGCc -3'
miRNA:   3'- -CGUGgGGCUGGagcCCUACG---AGUCGc -5'
19453 5' -59.6 NC_004685.1 + 65498 0.67 0.524922
Target:  5'- cCACCaCCGgguaACCgUCGGGcagGCUCGGCc -3'
miRNA:   3'- cGUGG-GGC----UGG-AGCCCua-CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 65054 0.67 0.524922
Target:  5'- uCAUCCCGGCCgagGGGcauccGUGgUCGGCGc -3'
miRNA:   3'- cGUGGGGCUGGag-CCC-----UACgAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 52918 0.67 0.514895
Target:  5'- uGCGCCuuGgcagugaucGCCUCGGacagcUGCUCGGUGu -3'
miRNA:   3'- -CGUGGggC---------UGGAGCCcu---ACGAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 35405 0.67 0.514895
Target:  5'- cCGgCCCGACCggcaCGGuGAUcGaCUCGGCGg -3'
miRNA:   3'- cGUgGGGCUGGa---GCC-CUA-C-GAGUCGC- -5'
19453 5' -59.6 NC_004685.1 + 68654 0.67 0.504947
Target:  5'- aCACCCCGACgcaUCGGGgcGC-CcGCa -3'
miRNA:   3'- cGUGGGGCUGg--AGCCCuaCGaGuCGc -5'
19453 5' -59.6 NC_004685.1 + 57438 0.67 0.503957
Target:  5'- -aGCCCUGcgugcgggucuccACCUCGGGcucuucGCUCGGCu -3'
miRNA:   3'- cgUGGGGC-------------UGGAGCCCua----CGAGUCGc -5'
19453 5' -59.6 NC_004685.1 + 61927 0.67 0.495082
Target:  5'- uGCGCaCCCGAgCCUCGuGGAagGCgCAGUu -3'
miRNA:   3'- -CGUG-GGGCU-GGAGC-CCUa-CGaGUCGc -5'
19453 5' -59.6 NC_004685.1 + 57905 0.67 0.495082
Target:  5'- uGCGCCgCG-CCUCGGcGAuggcUGCgugCAGCu -3'
miRNA:   3'- -CGUGGgGCuGGAGCC-CU----ACGa--GUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.